Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00604 ATGGTTTGTGAGATGGAGAGTGATTGTATTGAAGACATGATGGACATTGAAGTTCTATCATCAATGTGGCCAGAAGATGTTGGAACTGATGTAGGAAAACAGTTCAACATCGAAAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCTATAGCTGATTTTCAAAGATTAATGGAGCTTACAAATTATACAGATAAAGGGTCATCTCAATTGGCTTATTTAATGCAACATTGGGAGTATAAGCAAGCGAACGCGGTTCGACTTCTTCGAGAAGAGCTTGATAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTTAGAAAATTGGAGATAATTAAAGATAATAACCGATTCGAGGAAGAGAGTTACGGGGGAGATAAACGTCCGGTTTCGATATTAGATGATGCTTATTATACTTGGCAAGATCTACCTGTTGCAATAAAGAAaagtgatgttgttgttgaaaaCAAGAGGGTTGAAATAGAAGCTGAGTATGATACGGTTGTTTATTGGAAACATCGGTCGCAAGATTTGGAAAGACAGTTGGAGGCGAGTATTCGGAGAGAGGAGATATTGAAGGAAAAGTTGCAAGAAAGTATTGAGACTATTGAAAGACAATCCTCACCTGTTGAAGAATTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGATATCGCTTTATCTATAATCACTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTCGAAATTTTTACGGGATCAGGTGTGAAAGAGTCTCAAGAATTTAAGAGAGAAGTAATGGAGAAAGGAGTAGCTGCTAAAAAGGAAATAACTTTTGAGACGGAACTATTTGGATTTAAGACATTTTTGATATATGTAGAACCTGTGTTTAGTAAAGCAGGTGAAACAATTGGAGTAAACTATATGGGAATGGATATAACAGATCAGGTGAGAAAACGAGAAAGAATGGCGAAACTAAGGGAAGAAATTGCAGTTCAGAAAGCAAAGGAAACGGAACTTAATAAAACCATTCACATTACAGAGGAGACGATGAGAGCAAAACAAATGCTGGCAACGATGTCTCATGAGATAAGATCGCCGCTTTCTGGTGTTGTTAGCATGGCGGAAATTCTTAGTACAACAAAACTTGATAAGGAGCAAAGACAGCTTTTGGATGTCATGATATCTTCAGGAGATTTAGTTCTTCAACTTATTAATGACATACTCGATCTTTCGAAGGTTGAATCAGGAGCTATGAAATTGGAAGCTACAAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTGCTCCAAACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGAAATATAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTAGGCAGATTCTGACAAATTTAGTCAGCAATGCTGTCAAGTTTACAGCTCAAGGCAAAGTTGGTATAAACCTTTATGTTGTTCCAGAGCCACCATTTGCCAAAGAAGAAGAATCTAACCAAAAAGTGACAGAAAACCAGTCAACTATTTCAGCAAATGGATTGAAGGAAGAGAAGTATACATCATCACCAAGAAGTACTCGATGTGATCAAAATCTTATCGATGGTCAAAAACACGCTGACCAACCAATCCAAAATCATGCATTTAGCAATGATTGTCGATCTTCAGTTAACAGTGAATGCTCAATGAATGATGATACTGAGGAACAACGTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTGTACGACACAGGAATTGGCATACCTGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTTAGTGCAGACCATGCTCGAAAATATGGAGGCACAGGTCTCGGACTAGCAATATGTAAACAACTGGTTGAGTTGATGGGGGGTCGTCTAACGGTGACGAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAAGTATCAACGACTTGTGATAATTCTGATGATCCTGATGAGCTTTCGGATGTCGATAACAATGAAGATGACACAACCGAGGGATTCTTCCAATTCCAACCGCGAACTTTAGGCTCGCTTTTCACTTCTAATGGATCTACCAGGCCACACAGAATCTCACACAAGTTCAATGGTTTTCCGGACAACAATTGTCACTCAAATCTCTCTAGTAACATCATTTCAAATGGAACAAATTCACTTGAAGATGCATCTTCTGTTACTGTTGATGCTTCAGATATGtctgaatcaacaagttcatCAAATCATAGCAAAGAAACAAAGCATGAAAGTTTAGTTAATGGAAACAAACAGAACCATGATAATAAGGCACATGATAAGTTACAAAATGGTTTTGCAAACTCTAGTCAATGTAAGGATGCAAGTAGAGAAATGAATTTAGAAACAAAGTCAAGTGAACcaaaccaaatacatcaaggTCAAGGGAAGCAAGATAGTACTAGTAGCACTAGCATATCATCAGAAGTAACGAAATCAACACTAAAGCCAAATATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACGAAGTCAATGATGAAGCAGCTAGGATATACCATGGATGTTGTGAATAATGGAGTGGAAGCCATACGTGCAGTTCAAAGTCATTCTTACGACATTATCTTAATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTCTTACGAGGAAACAGGCAACTGGGATGCTGCACGAGAAGCTGGAGTTGAACAAAGCTTATCAGCTTCAGATGAATGTTCTGTACCACCTAAAAAGCGCATCCACATTGTCGCGATGACAGCAAACACAATGTCAGAGAGTGCAGACGAATGTTTCGCCATCGGTATGGACTCATTTGTGTCAAAACCAGTCACATTCCAAAAAATGAAAGAGTGTCTTGAAAAGTATCTAGGGTGA 3030 0.3749 MVCEMESDCIEDMMDIEVLSSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEIIKDNNRFEEESYGGDKRPVSILDDAYYTWQDLPVAIKKSDVVVENKRVEIEAEYDTVVYWKHRSQDLERQLEASIRREEILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQEFKREVMEKGVAAKKEITFETELFGFKTFLIYVEPVFSKAGETIGVNYMGMDITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGNIADDIPIEVTGDVLRIRQILTNLVSNAVKFTAQGKVGINLYVVPEPPFAKEEESNQKVTENQSTISANGLKEEKYTSSPRSTRCDQNLIDGQKHADQPIQNHAFSNDCRSSVNSECSMNDDTEEQRHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTTCDNSDDPDELSDVDNNEDDTTEGFFQFQPRTLGSLFTSNGSTRPHRISHKFNGFPDNNCHSNLSSNIISNGTNSLEDASSVTVDASDMSESTSSSNHSKETKHESLVNGNKQNHDNKAHDKLQNGFANSSQCKDASREMNLETKSSEPNQIHQGQGKQDSTSSTSISSEVTKSTLKPNILLVEDNKINIMVTKSMMKQLGYTMDVVNNGVEAIRAVQSHSYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDAAREAGVEQSLSASDECSVPPKKRIHIVAMTANTMSESADECFAIGMDSFVSKPVTFQKMKECLEKYLG 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00604 1009 Gene3D - 441 690 IPR036890 -
Tsu01g00604 1009 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Tsu01g00604 1009 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Tsu01g00604 1009 ProSiteProfiles Histidine kinase domain profile. 382 685 IPR005467 -
Tsu01g00604 1009 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1008 - -
Tsu01g00604 1009 Coils Coil 346 366 - -
Tsu01g00604 1009 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1008 - -
Tsu01g00604 1009 MobiDBLite consensus disorder prediction 527 557 - -
Tsu01g00604 1009 Pfam Response regulator receiver domain 867 935 IPR001789 GO:0000160
Tsu01g00604 1009 MobiDBLite consensus disorder prediction 533 557 - -
Tsu01g00604 1009 Gene3D - 859 1009 - -
Tsu01g00604 1009 MobiDBLite consensus disorder prediction 766 858 - -
Tsu01g00604 1009 CDD HATPase_EvgS-ArcB-TorS-like 491 682 - -
Tsu01g00604 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 683 IPR003594 -
Tsu01g00604 1009 MobiDBLite consensus disorder prediction 784 809 - -
Tsu01g00604 1009 PRINTS Bacterial sensor protein C-terminal signature 610 624 IPR004358 GO:0016310|GO:0016772
Tsu01g00604 1009 PRINTS Bacterial sensor protein C-terminal signature 645 663 IPR004358 GO:0016310|GO:0016772
Tsu01g00604 1009 PRINTS Bacterial sensor protein C-terminal signature 669 682 IPR004358 GO:0016310|GO:0016772
Tsu01g00604 1009 MobiDBLite consensus disorder prediction 766 783 - -
Tsu01g00604 1009 SMART HKATPase_4 486 685 IPR003594 -
Tsu01g00604 1009 Coils Coil 181 212 - -
Tsu01g00604 1009 ProSiteProfiles Response regulatory domain profile. 866 1008 IPR001789 GO:0000160
Tsu01g00604 1009 CDD REC_hyHK_CKI1_RcsC-like 867 1004 - -
Tsu01g00604 1009 MobiDBLite consensus disorder prediction 810 858 - -
Tsu01g00604 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Tsu01g00604 1009 Gene3D PAS domain 226 352 - -
Tsu01g00604 1009 Coils Coil 93 127 - -
Tsu01g00604 1009 SUPERFAMILY CheY-like 865 1009 IPR011006 -
Tsu01g00604 1009 SMART REC_2 865 1004 IPR001789 GO:0000160
Tsu01g00604 1009 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Tsu01g00604 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 682 IPR036890 -
Tsu01g00604 1009 Gene3D - 363 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00604 Tsu-Chr1 5312495 5318326 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00604 1 1008 Histidine Kinase Gene Family AT5G10720 56.415 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g00604 HATPase_c 7.7e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00604 - - cam:101512841 1738.78