Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00601 ATGTGGCCAGAAGATGTTGAAACTGATGTTGGAAAACAGTTCAGTATAGAAAAACCAGGAATGGATCAAGATATTTTGGAAGAAGTAACAATCTTAGAGGAACCAATTATAGCTGATTTTCAAAGAATTGTTGAGCTTACAAATTGTACAAATCAAGGGTCTTCTCAGTTAGCTAATCTAACGAAACATTGGGAGTATAAGCAGGCGAATGCAGTTCGCCTTCTTCGAGAAGAGCTCGACAAACTTAGCAAACAAAGGGAGGAAGTGGAGCTTAAAAAGTTGGAGCTTCTTAAAGACAATAATCGATTCGAGAAAGAAAGTTACCGTGGAGACAAACGTCCGGTTTCAATATTGGATGATGTTGCAATAAAGAAAAACGATGTTGTTATTCAAAACGAGATAATTGAAGTCGAGGCTGAGTATGATAACGTTGTTTATTGGAAAAATAGGGCGACCGATTTGGAAAGACAATTCGAGGCAAGTATACGGAGAGAGGTGAAATTAAAGGAAAAGTTGCAAGAAAGTATAAAGACTATTGAAAGACAATCCTCACCTGTGGAGGAACTGTCACAGATTCTTAATAGAAAAgataatttctttcattttataCTTCAAAATGCACCTTTTGTTATCGGCCATCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAACTATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACGGAGGATGAGATTTTCACCGGAACAGGTGTGAAGGAATTTCAAGATTTTAAGCGAGAAGTAATGGAGAAAGGAATTAttgcaaaaaaagaaataacttATGAGACAGAACTATTTGGATCAAAGACATTTTTGATGTATGTAGAACCTGTGTTTAGTAAGGCAGGCGAAACAATTGGAGTAAACTATATAGGAATGGAAATAACAGATCAGgtgcgaaaaagagaaagaatggCAAAGCTAAGGGAAGAAATTGCAGTTCAAAAAGCCAAGGAAATGGAACTTAATAAAATTATGAGAACAAAACAAATGCTAGCAACAATGTCTCATGAGATAAGTTCTCCACTTTCTAGTGTTGTTAGCATGGCTAAAATTCTTAGTACCACAAAACTTGATAGGGAGCATAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATATTTCCAAGGTTGAATCAGGTTGA 1212 0.3465 MWPEDVETDVGKQFSIEKPGMDQDILEEVTILEEPIIADFQRIVELTNCTNQGSSQLANLTKHWEYKQANAVRLLREELDKLSKQREEVELKKLELLKDNNRFEKESYRGDKRPVSILDDVAIKKNDVVIQNEIIEVEAEYDNVVYWKNRATDLERQFEASIRREVKLKEKLQESIKTIERQSSPVEELSQILNRKDNFFHFILQNAPFVIGHQDKELRYRFIYNYFPSLQEEDIIGKTEDEIFTGTGVKEFQDFKREVMEKGIIAKKEITYETELFGSKTFLMYVEPVFSKAGETIGVNYIGMEITDQVRKRERMAKLREEIAVQKAKEMELNKIMRTKQMLATMSHEISSPLSSVVSMAKILSTTKLDREHRQLLDVMISSGDLVLQLINDILDISKVESG 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00601 403 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 403 - -
Tsu01g00601 403 Pfam His Kinase A (phospho-acceptor) domain 340 403 IPR003661 GO:0000155|GO:0007165
Tsu01g00601 403 Coils Coil 162 182 - -
Tsu01g00601 403 CDD HisKA 340 399 IPR003661 GO:0000155|GO:0007165
Tsu01g00601 403 Gene3D - 323 403 - -
Tsu01g00601 403 Gene3D PAS domain 186 322 - -
Tsu01g00601 403 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 403 - -
Tsu01g00601 403 SMART HisKA_10 338 403 IPR003661 GO:0000155|GO:0007165
Tsu01g00601 403 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 327 403 IPR036097 GO:0000155|GO:0007165
Tsu01g00601 403 Coils Coil 72 106 - -
Tsu01g00601 403 Coils Coil 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00601 Tsu-Chr1 5295513 5297688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00601 1 403 Histidine Kinase Gene Family AT5G10720 61.871 1.48e-169 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00601 - - cam:101512841 644.81