Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00598 atggaatcagagaatttgattaaacaaGAATTGGAAGAATTGCAGAAACAATTAGGGAAGAAGCAAAAATTTGAAGACGCTGTTTCATCTCTCAAATCTCTGCTTCAACAATCATATCCATCAGCTTCTACCTCTCTCCGTAAATCTTTTTATACCGTTATATGCCGAGTTGCTACAGTGTTGAAGACGAGATATACGGCACCAGGTTTCTGGAGTGCTGGCTTGGGCCTCTTTGAGCAGGCTATATTGTTTGTTTCTGAACCTTCCGAGAAGGAGCACTTGAAGGCTTGTATTTCTCAGGCTAAGGAACATTTGCATCTAGGAGACAACCCTTCACAAACTTCAGTGAATCGTGAAAATAGAgGATATCTTTTTGAGGGGCACCTTACAGTAGATCAAGAGCCACCACAACCTGATTGGATGGTGCAGGCAAACCTCTTGGCAGCAGCTGCTAGACTATTTGAAGCTGAATCCTCTCAAGGTTTAGCAACAAATGAAACCACAGAAGATGATGCTGCTAGTGTGCTTGAAATGCTTAGAAATAGATTGGAAGAAGTTGTGCCCCTGATGGAGACTGGTGGTCCTGTAGCTCCAAGAGTTCCTCCTGCAAGTAAAGAAGTTGTGGCGAAACTTCCTGTCATTACTCTCACAGAGGAAGTCCTAGCTAATATGGGAAAAGATGCAGAGTGTGCCATTTGCAGGGAAAATCTGGTGTTAAATGACAACATGCAAGAGTTGCCGTGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCAATCTGTCGTTACGAACTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGTGAAAAGGAAGCCGAAGAGGAGAGGAAAGGTGCTGCAAATGCTCTCCGAGGTGGTGAATTCATGTATGTTTAG 933 0.4309 MESENLIKQELEELQKQLGKKQKFEDAVSSLKSLLQQSYPSASTSLRKSFYTVICRVATVLKTRYTAPGFWSAGLGLFEQAILFVSEPSEKEHLKACISQAKEHLHLGDNPSQTSVNRENRGYLFEGHLTVDQEPPQPDWMVQANLLAAAARLFEAESSQGLATNETTEDDAASVLEMLRNRLEEVVPLMETGGPVAPRVPPASKEVVAKLPVITLTEEVLANMGKDAECAICRENLVLNDNMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAANALRGGEFMYV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00598 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 277 IPR013083 -
Tsu01g00598 310 Coils Coil 7 27 - -
Tsu01g00598 310 ProSiteProfiles Zinc finger RING-type profile. 230 271 IPR001841 -
Tsu01g00598 310 Coils Coil 281 301 - -
Tsu01g00598 310 SUPERFAMILY RING/U-box 224 277 - -
Tsu01g00598 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 304 - -
Tsu01g00598 310 Pfam Ring finger domain 229 271 IPR001841 -
Tsu01g00598 310 PANTHER ABI3-INTERACTING PROTEIN 2-1 8 304 - -
Tsu01g00598 310 SMART ring_2 230 270 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00598 Tsu-Chr1 5269486 5272447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00598 7 310 C3H Transcription Factor Family AT5G20910 63.072 9.58e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00598 K16274 - gmx:100798732 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00598 01 5269486 5272447 Tsu01g00598 01 5269486 5272447 ECH