Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00594 ATGAACACACATATGATTGATTCCAACATTCTTACTAGTGGTATCAATGTCACCCCAAATGATCACAACAATAAcactagtaataataaattatacaaaGGGGTGAGGAAGAGAAAATGGGGGAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGTTCATATGATTCACAAGAAAAAGCTGCAAGAGCATTTGATGCTGCTCTTTATTGTCTACGTGGTCGCCATGCTAGTTTCAATTTTCCTAATACACCCCTTACCATCAATGTAGCTGTTGGTCACAAATCTCTTTCACCACAAGAGATTCAAGAGATTGCTGCCAAGTTTGCCAATGAGTGCTCACCAtcaattgaagaagaagaagaagatcaacAAGTACCATTAGTGTCACAAAATGATGCTAATTCTAGTTCTAATTCTAATTATGAATCCTACTCATCATGTCCTCTTTATGATAATGAGGGTGATATGAGGAGGATGGATTGGACATTTGAGGATATGTTGGATAACAACATGAATGATGTTGCTAATTGCATTGATTATGGCCTCTATAATGGGCTAGAAGATATGCAATACTCAAGTGAGTTACAATATTCCACTCAATCTTTTGAGGAACATAATGTAGACCAAAATGAATGTGAAGATGCTTTTTCAAATCATTCATTTCTTTGGAGTTGGAACTTTTGA 705 0.3433 MNTHMIDSNILTSGINVTPNDHNNNTSNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSQEKAARAFDAALYCLRGRHASFNFPNTPLTINVAVGHKSLSPQEIQEIAAKFANECSPSIEEEEEDQQVPLVSQNDANSSSNSNYESYSSCPLYDNEGDMRRMDWTFEDMLDNNMNDVANCIDYGLYNGLEDMQYSSELQYSTQSFEEHNVDQNECEDAFSNHSFLWSWNF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00594 234 MobiDBLite consensus disorder prediction 121 151 - -
Tsu01g00594 234 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Tsu01g00594 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 20 234 - -
Tsu01g00594 234 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Tsu01g00594 234 MobiDBLite consensus disorder prediction 133 151 - -
Tsu01g00594 234 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Tsu01g00594 234 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Tsu01g00594 234 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Tsu01g00594 234 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Tsu01g00594 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 234 - -
Tsu01g00594 234 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Tsu01g00594 234 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00594 Tsu-Chr1 5221690 5222394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00594 21 192 AP2-EREBP Transcription Factor Family AT1G74930 49.419 5.54e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g00594 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00594 - - mtr:MTR_1g014800 286.574