Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00589 AtgactactactactactaaaaAGATAACATGGAAATCTATGATCTTGATCTTAAATTGTTACAAGAGTAAATACCCTTTGGAGGAATCagaaaaacaagttttaaaacaagGTTCTTTTCAAAGATTATGTTTATCTGATATAAGCAATTCAAGTTCAACTCAAGCTATTGAAgatctttcaatttcttttggTGGTTCTAATAAACTTCATGCATTCACACTTGAGGAGCTTAAAGAAGCTACACATAATTTCTCATGGAGTAATATGTTAGGTGAAGGTGGTTTTGGACCTGTTTATAAAGGCTTTGTTGATGAAAAACTTAGAAAAGGTTTAAAGGCTCAAACTGTAGCTGTTAAATGTTTGGATTTGGATGGTTTGCAAGGTCATAGAGAGTGGCTGgCAGAGATTATATTTCTTGGACAACTAAGTCATCCACATCTTGTGAAGTTAATTGGATATTGTTGTGAAGATGAACATAGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTGGAGAATCAACTATTTAGAAGATACTCTGCTGCCATGCCATGGTCAACTAGGATGAAAATTGCATTGGGAGCTGCAAAGGGTTTGGCTTTCCTTCATGAAGCAGATAAGCCTGTAATATACAGAGATTTCAAAGCTTCAAATATCCTACTAGATTCGGATTATACAGCTAAATTATCAGATTTCGGACTAGCTAAGGATGGCCCTGAAGGAGAAGAAACACATGTAACGACACGCGTAATGGGAACACATGGTTATGCTGCCCCTGAGTACATCATGACAGGACACCTAACAACAAAGAGTGATGTGTATAGCTATGGAGTGGTTCTATTGGAATTGCTTACAGGAAGAAGGGTAGTGGAAAAATCTTCAGAATCAAGTAGAGGGAAGAATTTGGTGGAATGGGCAAGACCTATGTTGAGAGATCAAAAGAAGCTGCACAGAATCATAGACCGTAGACTTGAAGGACAATTTCCTATGAAAGGAGCATTGAAAGTTGCTATGTTGGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCTTATATGAGTGATGTTGTTAAAGTATTGGAACCACTTCAagattttgatgatgttttcaCAGGACCATTTGTCTATGTTGCTGTAAGTGAAAATGGTGATAAAGATCAAATTAGCACTCCTCagcaaaatagataa 1197 0.3459 MTTTTTKKITWKSMILILNCYKSKYPLEESEKQVLKQGSFQRLCLSDISNSSSTQAIEDLSISFGGSNKLHAFTLEELKEATHNFSWSNMLGEGGFGPVYKGFVDEKLRKGLKAQTVAVKCLDLDGLQGHREWLAEIIFLGQLSHPHLVKLIGYCCEDEHRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVEKSSESSRGKNLVEWARPMLRDQKKLHRIIDRRLEGQFPMKGALKVAMLAFKCLSHHPNPRPYMSDVVKVLEPLQDFDDVFTGPFVYVAVSENGDKDQISTPQQNR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00589 398 CDD STKc_IRAK 91 366 - -
Tsu01g00589 398 PANTHER OS01G0588500 PROTEIN-RELATED 23 388 - -
Tsu01g00589 398 SUPERFAMILY Protein kinase-like (PK-like) 64 364 IPR011009 -
Tsu01g00589 398 ProSiteProfiles Protein kinase domain profile. 85 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00589 398 PANTHER KINASE 1B 23 388 - -
Tsu01g00589 398 Pfam Protein tyrosine and serine/threonine kinase 87 363 IPR001245 GO:0004672|GO:0006468
Tsu01g00589 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Tsu01g00589 398 Gene3D Phosphorylase Kinase; domain 1 45 167 - -
Tsu01g00589 398 Gene3D Transferase(Phosphotransferase) domain 1 168 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00589 Tsu-Chr1 5171694 5174030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00589 71 363 Glycoside Hydrolase AT3G07070 53.378 4.60e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu01g00589 PK_Tyr_Ser-Thr 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00589 - - gmx:100802636 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00589 01 5171694 5174030 Tsu01g00589 01 5171694 5174030 ECH
Tsu07g00762 07 6278843 6281460 Tsu01g00589 01 5171694 5174030 ECH
Tsu08g02291 08 31986480 31989504 Tsu01g00589 01 5171694 5174030 ECH
Tsu08g00665 08 7133753 7136455 Tsu01g00589 01 5171694 5174030 ECH