Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00587 ATGTCTTCTCATCATGGTAGCAAAAAACTACATACAAACCTTGTTATGGTGGCTGTAGACAAAGACAAGAATAGTGGTTATGCCTATCGTTGGacaattaataatattgaaaacCCTATCATCATTGCAGTCCATGTTAAACACAAAGACCTTCCTCATAAGGGCACCAATGTTTTCCCCCCTGATGAAGAGGATGTAGACAATGTGTTCAGTCCCTTGCGTGTAATGTGTAATGATAAAGTTGTAAAGATGAAAGAAGCTGTAGTAGATCATAGTGATATTGCTAGAGGACTTTTGGAGTATGCAAAGAGGAATCACATCCAAACTATCATTGTTGGTGCACCCGCAAGCTACACCAAAAATGTTCTATCAAGATCTCTAAACATGAGGACTATAAGCAAAAGGTTTAAAGGATATGAGGATATAGCAACAACCATAATTAAATCAGCTCCAGATTATAGTTCAGTCTATGTAATTGCAAAAGGAAAGGTAGTGGAAACTCGACCAGCAATAAGCCCATTGGATAATTTAGATGTAAAATCACCTGCAATGTCACCTGCAATGACAACTTCTAAATCAGAAAATGATAGgggacaaaaatttaaaagaggaGGTAGCACTAATAGTAGATCAAGAAGAGGACTACTTTTGGTTTCAACTAATCAATCTTTGGAGAGCATTGATTTATCAAATCATCATAGCCAAAAGGCACAATTATTTAGCAAAAACTCAAGCTTAAATGAAAATGACTCATCTGGGTCACATAAATTTGGTTCATTGATTTTACCAAAATTAGAGAGGGATTCAAGCATTGAAGCAGATCCTCAACACTTAGGAGATATGGAAGCTGAGATGAAAGAATTGAGACTCAAACTTAGTAAGACTATGGACATGTACAAGTCAGCTTGCAAAGAAGCAATCACTGCCCAAAACAAGGCTAAAGAGATTAATCAATGGAAACTTGAAGAAGCGCGTATTGTTGAGGAATGTATGATGGCAAAAGAAGCAGCATTAGCAATGGCAGAAAAGGAAAAAGCTAAAGCAAAAGCTGCaattcaagaagctgatgaagcAATGAAAATGGCAGAAAAAGAAGCACAAAGAAGATTAAAGGCAGAGAGAAAGGCTAGAAGAGAAATGGAAGAGAAAGATCAAGCACTAAATGTGATTGCTCGTAAAGATATTCGATATAGACAATACACCTTAGACGAAATTGAAATTGCTACTCAAAATTTCTCATTATCAATGAAAATTGGTGAAGGTGGATATGGACCTGTTTTTAAAGGTCAACTTGATCATACAAATGTTGCTATCAAAGTTTTAAGACCTGATGCTAACCAGGGTAGAAAACAGTTCCTACAAGAGGTTGAGATATTATGCAACATAAGACATCCAAATATGGTCCTTCTCCTAGGTGCATGTCAAGAATATGGATGCTTAGTATATGAATACATGGACAATGGTAACCTAGAAGACAGattattaagaaaacaaaacagCCCTCCAATTCCATGGCAAAATCGTTTCGAAATAGCATATGAAATTGCAACAGCACTTCTTTTCCTTCACCAAACAAAACCAGAAGCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTCTTGGACAAAAATTTTGTTAGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTACCACCTTGTGTAGCAGATTCTGTCACACAATATCATATGACTTCAGCAGCTGGAACATTATCTTACATTGATCCTGAGTATCAACAAAGTggaaaattaacaacaaaatcaGATATTTATTCTTTAGGTATAGTGTTTCTTCAAATGATCACAGCTAAACCTCCAATGGGACTTTCTCATCATGTTAAAAAGGCTATTGAAAATGGAACATTTTCTGATATGCTTGATCCTGTTGTTACTGATTGGCCTATTGATGAAGTTTTGGTATTTGCTAAACTTGCTTTGAGTTGTGCTGAACTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTGATACCAGAGCTTAAACGATTAAAAGAGTTTGGATTTAAGTCacaaaaatatcaacaaaatcGGAGTCATGTACTGCGTCCTCCTGCGGCATCTCGAGGTTCACTTTGA 2121 0.3465 MSSHHGSKKLHTNLVMVAVDKDKNSGYAYRWTINNIENPIIIAVHVKHKDLPHKGTNVFPPDEEDVDNVFSPLRVMCNDKVVKMKEAVVDHSDIARGLLEYAKRNHIQTIIVGAPASYTKNVLSRSLNMRTISKRFKGYEDIATTIIKSAPDYSSVYVIAKGKVVETRPAISPLDNLDVKSPAMSPAMTTSKSENDRGQKFKRGGSTNSRSRRGLLLVSTNQSLESIDLSNHHSQKAQLFSKNSSLNENDSSGSHKFGSLILPKLERDSSIEADPQHLGDMEAEMKELRLKLSKTMDMYKSACKEAITAQNKAKEINQWKLEEARIVEECMMAKEAALAMAEKEKAKAKAAIQEADEAMKMAEKEAQRRLKAERKARREMEEKDQALNVIARKDIRYRQYTLDEIEIATQNFSLSMKIGEGGYGPVFKGQLDHTNVAIKVLRPDANQGRKQFLQEVEILCNIRHPNMVLLLGACQEYGCLVYEYMDNGNLEDRLLRKQNSPPIPWQNRFEIAYEIATALLFLHQTKPEAIVHRDLKPANILLDKNFVSKISDVGLSRLVPPCVADSVTQYHMTSAAGTLSYIDPEYQQSGKLTTKSDIYSLGIVFLQMITAKPPMGLSHHVKKAIENGTFSDMLDPVVTDWPIDEVLVFAKLALSCAELSKKDRPDLALEVIPELKRLKEFGFKSQKYQQNRSHVLRPPAASRGSL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00587 706 SMART serkin_6 412 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00587 706 ProSiteProfiles Protein kinase domain profile. 412 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00587 706 Gene3D Transferase(Phosphotransferase) domain 1 485 697 - -
Tsu01g00587 706 Coils Coil 278 298 - -
Tsu01g00587 706 SUPERFAMILY Protein kinase-like (PK-like) 394 667 IPR011009 -
Tsu01g00587 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Tsu01g00587 706 Pfam Universal stress protein family 15 116 IPR006016 -
Tsu01g00587 706 MobiDBLite consensus disorder prediction 176 214 - -
Tsu01g00587 706 Coils Coil 331 383 - -
Tsu01g00587 706 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 696 - -
Tsu01g00587 706 Gene3D HUPs 2 130 IPR014729 -
Tsu01g00587 706 Pfam Protein kinase domain 414 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00587 706 PANTHER OS02G0152300 PROTEIN 9 696 - -
Tsu01g00587 706 Gene3D Phosphorylase Kinase; domain 1 389 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00587 Tsu-Chr1 5159521 5164280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00587 84 682 Receptor kinase-like Gene Family AT5G12000 54.619 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu01g00587 Pkinase 8.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00587 - - gmx:100786386 799.275