Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00585 ATGGAAGTGTTGTTATATGTGGTTTCAGTGCCATTAAGAGTAGATAACTTAGTCTGCGATAACTCAATCATAGCTACATACATGGATGTATCCAAATTTAATTCTGTAACTAAGGTTTCCACCGAGACAGTTGTAGGTTCAGACGATTGTCATAATAATGGTGGCAATTTGGATGTTGAAATTGGTATTACAGAAGTCACGCCACCGGAATTAGATAAGAAAGGAGAAAGTCCTTTGATGGATATGTTATCCGAAAGTAAAAGTGTTCTGGTTGCTGGTGATGTAGGTTTAGCCCCAGAAAGTGAGGATGATTCATTATCATTGGAAGGTGAACAGTTTATTGATAGCTCGTGTTCTTTATCAGTTGTTAGTGAAAACAGTAGTATAGGTGGAGAGGAGTTCATCGCTTCTGATGCTACTTCAGAAGTTGGGACACCATGTTCGATAGATATGGAGAAGAGTATCGGTCCTGTCAATATTGTTGCTCCAGCAGCTGATTTGGGGGAGTCGAATGTTGACACAGATATTATGAGTGAACCCCTTGACGTGGCAGAGAGTCTTGACCAAGAGATTGGAGTTGAATCAGATCTAAAGCCTTCTACAATTGTTCATCAGACACCTCAGGAAGAGGGAACGAGTGTAACAGCTGTTCGGAGTGTTTTTGAATTGGATTATACCCCGTTATGGGGATTCATATCGCTATGTGGAAGAAGACCTGAAATGGAAGACGCAGTTGCAACTGTTCCTCGATTTTTGAACATTCCCATTCAAATGCTAATCGGTGATCGAGTACATGACGGAATAAACCGGTCTTTTAGGCCACAAATGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGgTGGCAAATTATTGTCGCGAACGCATCCATTTGGCTTTGGCTGAGGAAATAGAATTTGTCAAGGAAGGTCTAATCAATGGTAGTATCAAAGATAGTTGCCACGATCAATGGAAAAATGCTTTCACCAATTGTTTCTTAAAGGTTGATGCTGAAATTGGCGGAACAACTAATAATGAAGTTGTTGCGCCAGAAACTGTTGGCTCCACAGCTGTTGTTGCTCTTATATGTTCATCTCATATTATAGTTGCAAATTGTGGTGATTCAAGAGCTGTTCTTTGTCGTGGCAAAGAACCAATGGCGTTATCAGTGGACCATAAACCGAACAGAGAAGATGAATATGCAAGAATTGAAGCAGCCGGAGGAAAGGTGATACAATGGAATGGCCATCGTGTATTTGGTGTTTTAGCAATGTCAAGGTCTATCGGTGACAGATATTTGAAACCGTGGATTATTCCGGATCCAGAAGTTCAATTCATTCCTCGTGCAAAAGAGGACGAATGTCTCATTCTGGCTAGTGATGGTCTGTGGGATGTGATGACAAATGAAGAGGTGTGTGACCTGGCTCGAAAACGCATACTTCTTTGGTACAAGAAAAACGGCTTAGAACTACCCTCAGAAAGGGGAGAGGGAAGTGATCCTGCTGCACAAGCAGCAGCTGAGTTTCTATCGAATCGCGCTCTTCAGAAAGGAAGCAAAGACAACATCACCGTGATTGTTGTGGATCTAAAACCTCAACGCAAGTACAAGAACAAGACATGA 1629 0.418 MEVLLYVVSVPLRVDNLVCDNSIIATYMDVSKFNSVTKVSTETVVGSDDCHNNGGNLDVEIGITEVTPPELDKKGESPLMDMLSESKSVLVAGDVGLAPESEDDSLSLEGEQFIDSSCSLSVVSENSSIGGEEFIASDATSEVGTPCSIDMEKSIGPVNIVAPAADLGESNVDTDIMSEPLDVAESLDQEIGVESDLKPSTIVHQTPQEEGTSVTAVRSVFELDYTPLWGFISLCGRRPEMEDAVATVPRFLNIPIQMLIGDRVHDGINRSFRPQMTHFFGVYDGHGGSQVANYCRERIHLALAEEIEFVKEGLINGSIKDSCHDQWKNAFTNCFLKVDAEIGGTTNNEVVAPETVGSTAVVALICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVQFIPRAKEDECLILASDGLWDVMTNEEVCDLARKRILLWYKKNGLELPSERGEGSDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKYKNKT 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00585 542 Pfam Protein phosphatase 2C 274 525 IPR001932 -
Tsu01g00585 542 SMART PP2C_4 214 530 IPR001932 -
Tsu01g00585 542 Gene3D - 215 542 IPR036457 -
Tsu01g00585 542 SUPERFAMILY PP2C-like 215 534 IPR036457 -
Tsu01g00585 542 CDD PP2Cc 233 532 IPR001932 -
Tsu01g00585 542 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 96 542 - -
Tsu01g00585 542 ProSiteProfiles PPM-type phosphatase domain profile. 228 532 IPR001932 -
Tsu01g00585 542 PANTHER ALPHABET, ISOFORM E-RELATED 96 542 - -
Tsu01g00585 542 ProSitePatterns PPM-type phosphatase domain signature. 279 287 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00585 Tsu-Chr1 5139900 5143237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00585 1 542 PP2C-type Phosphatase Gene Family AT1G17550 47.740 5.83e-165 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00585 K14497 - gmx:100805281 819.305