Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00577 ATGGACGGTGTTGATGTTCCTTACAATCCTCGTACTGTCGAAGAAGTCTTTCGTGATTTCAAAGGTCGCAGAGCTGCCTTAATCAAAGCCCTCACCATTGATGTCGAAGAATTCTACCAGCAGTGTGATCCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAGGTCAACCTGCCAGCTGAGGAAGTGCCGCCTGAGCTTCCAGAGCCTGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTCTCTTTGGTTGCTGTACACAGCGATGCTTGGTTACTTTCTGTGGCTTTCTATTTTGGTGCTAGGTTTGGATTCGACAAAGCTGACAGGAAGCGACTATTTAATATGATAAATGATCTTCCAACAATCTTTGAAGCTGTTACAGGGTTGGCCAAGAAACAAGGAAAGGAAAAGTCAGTTTCTAATAATAGCAGTACCAAAGCCAAATCAAACTCTAAGCGAGGTTCTGAACCTCAGACAAAGTATTCAAAACCAATGACAATACAAATGCAATCAAATGAAGATGATGAGGATGGTCTCGGTGTGGACGAGGAAGATGATGAGGAAGAACATGGAGATGCATCGTGTGGGGCTTGTGGAGAAAGCTATGCAACTGACGAGTTTTGGATTTGCTGCGACATATGTGAGAAGTGGTTTCATGGAAAATGCGTGAAGATTACTCCGGCGAGGGCTGAGCATATCAAACAGTACAAATGTCCAGCTTGCAGCAAGAGAGCTCGCACTTGA 780 0.4449 MDGVDVPYNPRTVEEVFRDFKGRRAALIKALTIDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEAVTGLAKKQGKEKSVSNNSSTKAKSNSKRGSEPQTKYSKPMTIQMQSNEDDEDGLGVDEEDDEEEHGDASCGACGESYATDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSKRART 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00577 259 SMART PHD_3 206 254 IPR001965 -
Tsu01g00577 259 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Tsu01g00577 259 ProSiteProfiles Zinc finger PHD-type profile. 204 256 IPR019787 -
Tsu01g00577 259 MobiDBLite consensus disorder prediction 187 203 - -
Tsu01g00577 259 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 257 - -
Tsu01g00577 259 MobiDBLite consensus disorder prediction 146 204 - -
Tsu01g00577 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 255 IPR013083 -
Tsu01g00577 259 PANTHER CPG BINDING PROTEIN 7 257 IPR045104 GO:0006355|GO:0042393
Tsu01g00577 259 SUPERFAMILY FYVE/PHD zinc finger 195 256 IPR011011 -
Tsu01g00577 259 Pfam PHD-finger 207 255 IPR019787 -
Tsu01g00577 259 ProSitePatterns Zinc finger PHD-type signature. 207 253 IPR019786 -
Tsu01g00577 259 MobiDBLite consensus disorder prediction 146 185 - -
Tsu01g00577 259 CDD PHD_AL_plant 207 256 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00577 Tsu-Chr1 5101091 5104579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00577 1 258 Alfin-like Transcription Factor Family AT3G42790 69.615 6.44e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tsu01g00577 Alfin 1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00577 - - cam:101493315 432.565