Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00571 ATGGGGTGGGGTCACCTTGGAAGACATGGTTCAGATTCCGCTAACAACGCCGATGCAGGTCCGAGCACCAGCATGCCGGTACCACGGCAGTTTCCTCCGGCAGCTCAACCGGAGATGATGCGAGCAGCTGAAAAAGACGATCAATACGCCTCTTTCGTTTACGAAGCCTGTCGTGACGCCTTCCGCCACCTCTTTGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTACTATGTTCTTACAACAGGCTCTGGACAACAAACACTTGGAGAAGAATACTGTGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACACCTGCCAGGCGTGCTTTATTCATTGTATACCAGTCAGCGATTCCATACATTGCAGAACGAATTAGTTCTAGAATTGCTTCTCGAGGCATTATCCTTGCTGACTATGAGTCTGCTGAGAATTATTATGGTGAAAATGCCCGCGGGAGTAGTAGTTCTCGGGTTTATCCCGCGAGTGAGCTTTCTACTTCATCTACCTCAGGGCAGTCTACTTCAACTCTGACGAGGTTGAAGGAGAAACTCGGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTCATGTTGTTTTACTTTGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATAGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCCGCTGAAGCGCTGCGTCGAAGAAATTTTTCATCACTTGCTGGTTCAGTTCATCAGGCATCCTTTGCAACCGATCATACATCAGCTGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCCAGAAGCTGACAATGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGCATCATGCATCTAGTGGGGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGCATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCGCTTTGCCGCACCCCTATAACACACTCAAGTCTAGTTTGTATTTATCATTCAGACTTCTAG 1197 0.4586 MGWGHLGRHGSDSANNADAGPSTSMPVPRQFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILADYESAENYYGENARGSSSSRVYPASELSTSSTSGQSTSTLTRLKEKLGGFWLHMVQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFSSLAGSVHQASFATDHTSAGHGLPVLNEEGNLASPEADNGSWVSGSSSSEHHASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00571 398 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Tsu01g00571 398 MobiDBLite consensus disorder prediction 160 187 - -
Tsu01g00571 398 PANTHER PEROXISOME BIOGENESIS FACTOR 10 28 395 - -
Tsu01g00571 398 Pfam Zinc finger, C3HC4 type (RING finger) 343 387 - -
Tsu01g00571 398 CDD RING-HC_PEX10 343 382 - -
Tsu01g00571 398 SUPERFAMILY RING/U-box 343 387 - -
Tsu01g00571 398 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g00571 398 Pfam Pex2 / Pex12 amino terminal region 46 282 IPR006845 -
Tsu01g00571 398 ProSiteProfiles Zinc finger RING-type profile. 344 382 IPR001841 -
Tsu01g00571 398 SMART ring_2 344 381 IPR001841 -
Tsu01g00571 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 395 IPR013083 -
Tsu01g00571 398 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 28 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00571 Tsu-Chr1 5053444 5057644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00571 338 394 C3H Transcription Factor Family AT4G28270 34.247 2.18e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00571 K13346 - gmx:100783914 667.537