Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00543 ATGGTCAAAACCAAACAAGGAACCTAcgtacaaaaacaaaacaaagtcGTAGTACTATGGGACCTCGACAACAAACCACCACGTGGACCACCCTACGACGCCGCACTCTCTCTCAAAACCCTCGCCGAAACTTTCGGCCATCTCACCGACATCTCCGCTTACGCTAACCGTCACACCTTCACTCATCTCCCTGAATGGGTCCTCAATCAACGCCGAGAACGCAAAAACCTCGATTACCTCGAACGCAAAGGTATCCTTAATCCCTCCGAACCTTACATATGTTCTGTTTGCGGTCGTAAATGTAAAACAAATGTTGATCTTAAGAAACACTTTAAGCAACTTCATGAAAGAGAGAGACAGAAAAAGTTGAATCGTTTGAATTCATTGAAAGGGAAGAAGAGACAGAAGTATAAGGAGAGGTTTGTTAGTGGTGATTCGAAGTATAATGACGCGGTTCGAGGGATTTTAACGCCGAAAATTGGTTACGGTTTAGCCTCTGAGTTGCGGCGGGCGGGTGTTTTTGTTAAGACTGTTGAGGATAAACCTCAGGCTGCTGATTGGGCTTTGAAAAAGAGGATGATGTATTCGTTGGATAGAGGGGTTGATTGGTTGTTTTTGGTTTCGGATGATTCGGATTTTAGTGAGATGTTGAGGAGGGCTAAGGAGGCGAATTTAGGGACTGTTGTTGTTGGTGATGTTGATAGAGCTTTAGGGAGACATGCTGATTTGTGGGTTTCGTGGAATGATGTTGAGAATGGTGAGGTTACGGAGAAGGATTTGGTTCCAAAGAGTAGAGAGAGGAGGAGAACAACAAATGCAACGACGACAACGACAATGGATGAGTTTGGTGATGTGTTGATTTTTCATGACGGCAAGGAAATGGAAATGGGAGAAGATTTTATGTTGGAGTATAGCGACAATGAGCTTGACACAAATTTGTGGTTTAAGAATCAATTGCTACCCAAATTGAGGTTGAGTGATGTTGAAAGCTATGTAGCATCGACACTGTTTTGGAAATTTCATACACAAAGAAATGAATCCTATTTGCTGAGATGGTATGTACAGTAG 1068 0.4223 MVKTKQGTYVQKQNKVVVLWDLDNKPPRGPPYDAALSLKTLAETFGHLTDISAYANRHTFTHLPEWVLNQRRERKNLDYLERKGILNPSEPYICSVCGRKCKTNVDLKKHFKQLHERERQKKLNRLNSLKGKKRQKYKERFVSGDSKYNDAVRGILTPKIGYGLASELRRAGVFVKTVEDKPQAADWALKKRMMYSLDRGVDWLFLVSDDSDFSEMLRRAKEANLGTVVVGDVDRALGRHADLWVSWNDVENGEVTEKDLVPKSRERRRTTNATTTTTMDEFGDVLIFHDGKEMEMGEDFMLEYSDNELDTNLWFKNQLLPKLRLSDVESYVASTLFWKFHTQRNESYLLRWYVQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00543 355 PANTHER - 1 278 - -
Tsu01g00543 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 120 IPR013087 -
Tsu01g00543 355 SMART c2h2final6 92 115 IPR013087 -
Tsu01g00543 355 CDD PIN_LabA-like 102 232 - -
Tsu01g00543 355 PANTHER OS06G0166200 PROTEIN 1 278 - -
Tsu01g00543 355 Coils Coil 112 132 - -
Tsu01g00543 355 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Tsu01g00543 355 Gene3D - 7 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00543 Tsu-Chr1 4756554 4760387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00543 1 267 C2H2 Transcription Factor Family AT5G52010 70.037 2.21e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g00543 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00543 - - mnt:21392226 443.736