Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00540 ATGATGAAGGGTTTGTCGGTAGATGAAAATTTGTCAAATTTGACATCTGCTTCAAGTGACATAAGTGCTTCTAATTCAGCAACTAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAACCAAAAGGAAGAGAAATCTTCCTGGTCATCCAGACCCTGAGGCAGAAGTAATAGCTTTGAGTCCACAAACCTTATTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTTCATAAAAGAGGACATAATTTACCATGGAAgttaaagaaaagaaacagcAAAGAAATCATAAGAAAGAAAGTATATGTTTGTCCAGAATCAACATGTGTTCATCATGAAGCTTCAAGAGCACTTGGTGACTTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGTgagaagaaatggaaatgtGAGAAGTGTTCTAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCATTCAAAAATTTGTGGCACCAAAGAGTATAAGTGTGACTGTGGAACCCTTTTCTCAAGAAGGGACAGTTTCATCACTCATAGAGCCTTTTGTGATGTATTATCACAAGAGAGTGCTATATCAATTTCAGCAGTAAACCCTCTATTCTCATCACACTCTCAATTTAATCATAGCCATAATTTCCAACCACCATCCCTAAAAAAAGAACAAGACTTCAATATTTTAAGACCAGAAATACCATCATGGTTCCCTTCATCAACACCACAACAATTACTCCCTACTCATTTTAgccattatcatcatcaaaaccCTAACCCTACAACTTTATTTCATTCAAATTTCAACTCCAACaatattattactactacttcTTCTCCTCACATGTCTGCCACTGCTTTACTGCAAAAAGCATCACAAATTGGTGTAACAGTAAGCAAAACAGAACCTTATATACCCCACTTAATGCAAACTCACGTGCCTTATATGACTTCACGTGAAGAAATAGTGAATAATAATACTGCTGGTGCTGGTTTTTCTCATTGTTTGGCTTCATACGGAAATAAAGCTGTTAGTAATACAGAAGAATCTTCTCTTTTGCATGATGTGATATTTGGTAATGAGAATTCTTCATCACATTCATCACAATTTGAAAGTGTTACTGATGCTATGAGTATGAGGGGAGGAATGTTTGATCCACAAATAGATAATAATAACTTTGAGGGACaacaatattccaattttggtAAAAGCAACATTATGAAAGGTGGTGCCATAATCAATGATGATGAAATGACAAGGGATTTTTTGAGTCTTGGTGCATTTTCACAAAGAGATGACTTTTTGTTTAGTATTTCTGGTGGAATTGATGATCCTTTGGGTTCTTTATCATATGCAATTGAGGAACCCGTGACACACATGATTGGTTATTCCCTCTCAACCGAGTTCCTTCCTAGTTCCTATGATGACCAACCACGTCTTGGTAGTAGGAATTGTGAAGGCTGGAGGGAAGTGTGTTCGACTCCCATCTATGacattttttgGAGAATCACTGTAACAAACTTTCACGGAGAAAATCTCGTTGGTATATTACACGATGCGTCTTCCACTTCACTCGTTATCGTTTGCCATGGTTTTCACTCTTCCAAGGAAAGGATCCCCATGGTGAACCTTGCTGCTGCTCTGGGAAAAGATGGAATCAGTGCCTTCCGATTTGACTTTGCCGGAAATGGGGAAAGTGAAGGTTCATTTCAGTATGGTAACTACTACAGAGAAGTTGAAGACCTGCGAGCTATAGTCCAACACTTCCGTGAGAAGAAATATGTAATTACTGCAATTGTTGGTCATAGTAAAGGGGGTAATGTGGTTCTGTTATATGCTTCAAAATATAAGGATATTCATACTATTGTTAATATATCTGGCCGGTTTAACCTAGCAAGAGGTATGGAGAGTCGCTTGGGCGAAAATTTTATACAAAGGATCAAACAAGATGGATTTATAgatgttaaaaacaaaaaagGGAAGATTATGTTCCGTGTTACTGAAGAAAGTTTAATGGACCGTCTAAATACTATAACCCATCTCGCCTGCTTATCCATCCCTGAAAATTGCAGGGTATTGACTGTTCATGGATCCATGGATGAAACTGTACCTGCAGAAGATGCTTTAGAGTTTTCTAAGTTCATATTAAATCATGAATTGTGCATCATAGAAGGGGCTGATCATGAATACACTTGTCATCAAGATGAATTGACCAGCTTAGTTTTGGAATTTATCAAGGTTCATCATGATAAGGAAAACAATACATCTAAGCAGACACGATTTGGACGAGTAGATAAACCTATCCATTACAGATAA 2349 0.3559 MMKGLSVDENLSNLTSASSDISASNSATKNGKASTNLEPQTKRKRNLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNSKEIIRKKVYVCPESTCVHHEASRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESAISISAVNPLFSSHSQFNHSHNFQPPSLKKEQDFNILRPEIPSWFPSSTPQQLLPTHFSHYHHQNPNPTTLFHSNFNSNNIITTTSSPHMSATALLQKASQIGVTVSKTEPYIPHLMQTHVPYMTSREEIVNNNTAGAGFSHCLASYGNKAVSNTEESSLLHDVIFGNENSSSHSSQFESVTDAMSMRGGMFDPQIDNNNFEGQQYSNFGKSNIMKGGAIINDDEMTRDFLSLGAFSQRDDFLFSISGGIDDPLGSLSYAIEEPVTHMIGYSLSTEFLPSSYDDQPRLGSRNCEGWREVCSTPIYDIFWRITVTNFHGENLVGILHDASSTSLVIVCHGFHSSKERIPMVNLAAALGKDGISAFRFDFAGNGESEGSFQYGNYYREVEDLRAIVQHFREKKYVITAIVGHSKGGNVVLLYASKYKDIHTIVNISGRFNLARGMESRLGENFIQRIKQDGFIDVKNKKGKIMFRVTEESLMDRLNTITHLACLSIPENCRVLTVHGSMDETVPAEDALEFSKFILNHELCIIEGADHEYTCHQDELTSLVLEFIKVHHDKENNTSKQTRFGRVDKPIHYR 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00540 782 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 443 - -
Tsu01g00540 782 SUPERFAMILY alpha/beta-Hydrolases 487 757 IPR029058 -
Tsu01g00540 782 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Tsu01g00540 782 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Tsu01g00540 782 MobiDBLite consensus disorder prediction 17 54 - -
Tsu01g00540 782 Gene3D Classic Zinc Finger 105 196 - -
Tsu01g00540 782 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Tsu01g00540 782 MobiDBLite consensus disorder prediction 17 42 - -
Tsu01g00540 782 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 15 443 - -
Tsu01g00540 782 Pfam Serine aminopeptidase, S33 534 646 IPR022742 -
Tsu01g00540 782 Gene3D Classic Zinc Finger 67 94 - -
Tsu01g00540 782 SMART c2h2final6 113 143 IPR013087 -
Tsu01g00540 782 SMART c2h2final6 71 93 IPR013087 -
Tsu01g00540 782 SMART c2h2final6 148 168 IPR013087 -
Tsu01g00540 782 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Tsu01g00540 782 Gene3D alpha/beta hydrolase 512 777 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00540 Tsu-Chr1 4724275 4737040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00540 7 312 IDZ Gene Family AT1G55110 56.342 3.00e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g00540 Hydrolase_4 1e-14 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00540 K25870 K06889 gmx:100776424 467.618