Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00534 ATGTCAACTCTTTTTCATGATTTGCGAGAATTCATAACCAACTCGAGCTGCCAAATCAGTGAGTCAGACCCATGTCGTGACGAGTCAAAAGCTTTGATTCTAAAATTCGTTGCTATGGCAATAATTCTAGTAACAGGAATTACCGGAATCACGATACCGTTAATAGGAAACCGGCGAGGACTAGGCGAGGTAATACCGTCGATGAAGGCGTTTGCGGCGGGAGTAATATTAGCGACGGGGTTTGTTCACATGCTTAGAGATGCGACGGAAGCATTTAATCATCGTTGTTTGAAATCTTACTCGCACGTGTGGTCGGAGTTTCCTTTTTCCGGTTTTTTCGCTATGGTTTCAGCTTTGTTTACTCTTTTAGTTGACTTTGTTTCAACTCAGTATTATGAGAAGAAATCGAGAAATGGTACACGTGATCGTAACAATGGTGGCTCTCAGCACGGTGAAATCGATGATTTGGAGGAGGAATTGTTGGGATCGGGAATTGTGGAGGTTAAGGAAGTTGGGGAAGAAAGGAGTATCGTAGGGATGCATGCTCATGGATCGCATCATAGACATTCTCATCATCAGAAccatcatgatgatgatgatgatgatcattCGCATTCTCATTCGTTTGATGATGTGGAAGGTAGCATCCGCCATGTAGTTGTTTCGCAGGTACTGGAACTTGGAATAGTTTCACATTCCCTGATAATTGGGCTATCACTAGGAGTCTCACAAAGTCCATGTACAATGAAACCCTTAATTGCAGCATTATCCTTCCACCAATTCTTTGAAGGATTTGCACTTGGTGGTTGCATATCAGAAGCCAAATTCAACACATTATCAGCAACAATAATGGCATGTTTTTTTGCACTTACAACACCAATTGGTGTTGCAATAGGAACATGTATTGCCTCAAATTTCAATCCTTATAGTCCAGGAGCTCTTATTACAGAAGGTATCTTGGACTCTTTGTCAGCTGGAATTTTAGTGTATATGTCTTTGGTGGATTTAATAGCTGCTGATTTTCTTAGTACGCGAATGCGGTGTAGCTTTCGACTTCaagttgtttctttttgtttgcTTTTCCTTGGGGCTGGATGTATGTCTTCTCTTGCACTTTGGGCataa 1125 0.4 MSTLFHDLREFITNSSCQISESDPCRDESKALILKFVAMAIILVTGITGITIPLIGNRRGLGEVIPSMKAFAAGVILATGFVHMLRDATEAFNHRCLKSYSHVWSEFPFSGFFAMVSALFTLLVDFVSTQYYEKKSRNGTRDRNNGGSQHGEIDDLEEELLGSGIVEVKEVGEERSIVGMHAHGSHHRHSHHQNHHDDDDDDHSHSHSFDDVEGSIRHVVVSQVLELGIVSHSLIIGLSLGVSQSPCTMKPLIAALSFHQFFEGFALGGCISEAKFNTLSATIMACFFALTTPIGVAIGTCIASNFNPYSPGALITEGILDSLSAGILVYMSLVDLIAADFLSTRMRCSFRLQVVSFCLLFLGAGCMSSLALWA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00534 374 Pfam ZIP Zinc transporter 33 371 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Tsu01g00534 374 MobiDBLite consensus disorder prediction 135 154 - -
Tsu01g00534 374 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 12 374 - -
Tsu01g00534 374 PANTHER ZINC/IRON TRANSPORTER 12 374 - -
Tsu01g00534 374 TIGRFAM zip: ZIP zinc/iron transport family 17 374 IPR004698 GO:0005385|GO:0016021|GO:0071577
Tsu01g00534 374 MobiDBLite consensus disorder prediction 182 209 - -
Tsu01g00534 374 MobiDBLite consensus disorder prediction 192 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00534 Tsu-Chr1 4689962 4693261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00534 13 374 Inorganic Solute Cotransporters AT1G60960 60.358 1.81e-141 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00534 K14709 - gmx:100809426 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00534 01 4689962 4693261 Tsu07g00813 07 6678978 6681723 PCT