Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00533 ATGACTCCTGTTTCACTGAATCCACCGGGTCCTAATTCCTTACTACAAGGTCAAAAtcaattcatcaatttttctCCTATTAATCAGGACCCTCCAACCTTCTTTAACTTGCTTGGAGGAGATCATGATCATCATCAGGATGATGATAAGCTGATATTTGAACAAGATGGATCATCATCAAATAATCATGAACAAGAACTCTATAATAATTCATCATCAAGTGATCCAAGCAGTGCACGTGACACAAATTTATCATCTTCCTTAGaagtagaagaagaaagtgGTCACGGGTCAGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAGATGATCAACAAAACTGTTACTACTGATGATGATGTTACAAAAACTCCAATGATGAGATCAAGTAACAGTGTTACTGCTGACAAAGTAAATCCAATGATGAATCCAAGTCAAAGAAGCCCTCGTAGTAGTAATAACAGCGGCGGTAATAACAACATTATTAGGGTTTGCTCAGATTGTAACACAACTACTACCCCACTTTGGAGAAGTGGCCCTATGGGCCCTAAGTCGCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTTGCCACTCCAACAAAGACTAACAAGGAAAAGAAGCCTCGTGTAAACAATACTACACAAttcaagaaaaagaacaagTCTATTACTACTACTCCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGCAAAAGCTTGAATCTTATGCATTAAATTTGAGAAACAACTCGGATTTTGAAGATGTGTTTCCTTCAGATGAAGCAACTGAAGCCGCTTTACTTCTAATGCGTATATCTTCTGGCGGCGAACTTTTTACTCTTAATTAG 894 0.368 MTPVSLNPPGPNSLLQGQNQFINFSPINQDPPTFFNLLGGDHDHHQDDDKLIFEQDGSSSNNHEQELYNNSSSSDPSSARDTNLSSSLEVEEESGHGSEKWMSSKMRLMKKMINKTVTTDDDVTKTPMMRSSNSVTADKVNPMMNPSQRSPRSSNNSGGNNNIIRVCSDCNTTTTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGFATPTKTNKEKKPRVNNTTQFKKKNKSITTTPTTSAGSSSQDVQKLESYALNLRNNSDFEDVFPSDEATEAALLLMRISSGGELFTLN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00533 297 MobiDBLite consensus disorder prediction 229 250 - -
Tsu01g00533 297 ProSiteProfiles GATA-type zinc finger domain profile. 165 197 IPR000679 GO:0006355|GO:0043565
Tsu01g00533 297 CDD ZnF_GATA 166 203 IPR000679 GO:0006355|GO:0043565
Tsu01g00533 297 Gene3D - 163 241 IPR013088 GO:0006355|GO:0008270
Tsu01g00533 297 SMART GATA_3 161 221 IPR000679 GO:0006355|GO:0043565
Tsu01g00533 297 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 41 290 - -
Tsu01g00533 297 MobiDBLite consensus disorder prediction 53 102 - -
Tsu01g00533 297 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 41 290 - -
Tsu01g00533 297 Pfam GATA zinc finger 167 200 IPR000679 GO:0006355|GO:0043565
Tsu01g00533 297 MobiDBLite consensus disorder prediction 55 91 - -
Tsu01g00533 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 202 - -
Tsu01g00533 297 MobiDBLite consensus disorder prediction 212 250 - -
Tsu01g00533 297 MobiDBLite consensus disorder prediction 122 161 - -
Tsu01g00533 297 ProSitePatterns GATA-type zinc finger domain. 167 192 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00533 Tsu-Chr1 4682449 4685209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00533 90 290 C2C2-Gata Transcription Factor Family AT4G26150 35.652 4.98e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu01g00533 GATA 2.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00533 - - mtr:MTR_1g016170 290.812