Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00531 ATGGCAGAAACTGCAGTATGGTTTGTTCTTAAACAAGTATACCAACTACTAAAAGAAGAAGCTAAATTACTGAAACATGTAAGAAAAGATTTTGAAGATATTAAAAACGAACTAGAGTTTATCCGCGTCTTCTTAAAAGACGCGGATAAAAGAGCCACAACAGAAGAATTAGGAATCAAACTTTGGGTGAAACAGTTGAGAGAATTATCTTTTCACATTGAAGATGTCATTGATGCATACATCATGGATGTAGTAAATGCAACACATCATCATGATCATCATGGATACATAGGGAAATTCCAAAGTGTTATTGGattgatgaaattgaaaaccctaaccctaaaaccTCGTCATCGGATAGCAAGTGAGATTCAAGAGATCAAATTGAGGATTTATGgaatcaaagaaagaattgatagATACAATTTTCAATTCTCTGAACAAGAACAAGGATTGTCGATTAAGTATCCTGATCGATTGGGTTCGCTTTTCGTTGATGAAGGTGAAATTGTGGGGTTTGAGAAACCTAGAGATGAAATTGTTGGTTGGTTAGTTGATGGAGACGAAAGAAGTCGGAGTGTGATTTCGGTTGTTGGAATGGGGGGACTAGGGAAAACAACACTtgctaaaaatgtttttgatgatCAACAAGTGAAAGGTTGCTTTGATTGTCGCGCATTTCTCGTGGTTTCTCAATCATATAGTGTTGAAGCTTTGGTGAGAAACATGATGTTGCagttttttgaagaaactaaagAGCCTCTTCCTCAAGGTATAAACATGATGGACAAGACGACACTCATAACTGTTGCAAGGTCTTACTTGCAGAGAAAGAGGTATGTGATTTACTTTGATGATGTATGGAAAGTAGAGTTTTGGGATGAGATCCAACTAGCTACACCAGATAACAAGTTAGGAAGTAGGATAATGATCACAACCAGGAATTTGGATGTTGCCAACTATTGTAGGAAAGATTCTCGCGTTCAAGTGCACAAGCTGCAACCCTTGCCTCCAAACAAAGCATGGGAACTCTTTTGCAACAAGGCATTTCGATTTGATTTCGATGGAAGCTGTCCATCAGAGCTGAAAGATATATCCGACGATATCGTTCAAAAATGTGAGGGGTTGCCGCTTGCAATTGTGGCTATAGGAGGTCTCTTGTCAACTAAAGATAAAACTGTTTCTGAGTGGAAAAAACTATGCCAAAATCTAAGTTTGGAGTTAGACCGTAATCCACATTTAGCTAATTTAACAAGAATTTTAGGCATGAGTTATGATGACTTGCCTCATTATTTGAAATCATGCATCTTATATTTTGGTATATACCCAGAAGATTACTCAATTAGGAGTTCAAGGTTGATTCGACAATGGATAGCGGAGGGGTTTGTTAAACATGAAGTGGGAAAATCTTTGGAGGAAGTTGGAGAAGAATATTTGACAGAGTTGATCAATAGAAGTTTGGTTCAAGTCTCACGTGTTCACTATGATGGTAAAGCTACAAGTTGCCGAATCCACGATCTGTTACGAGAAATGATCATGAGAAAAATGAAGGATTTAAGCTTTTGTCATGTCGTGGATGAAGATGATCATGAACAAATCTCTGATGTAATCATTAGGAGATTGGCTATAAACACCAGTTCCAACAACATGCTAAGGAGCATTGAAAACTTTCCCCTACGTTCCCTATATATATTCgatgttttaataaaattttccgATTACTTTGGGAGTAAATTCTTTGCAAAATCTAAGCTTTTGAAAGTATTGGACTTGGAAGGTGCTTTGTTGGACTATGTTCCTGATGATATTGGAAATATGTTTCACTTAAAGTACTTGAGCTTAAGATATACAAATGTCAAGAATCTTCCGAAATCCATCGGCAAACTACAAAATCTAGAGACTTTAGATCTAAAGAGAACACTTAATTCACGAGTTaccaaatga 1944 0.3493 MAETAVWFVLKQVYQLLKEEAKLLKHVRKDFEDIKNELEFIRVFLKDADKRATTEELGIKLWVKQLRELSFHIEDVIDAYIMDVVNATHHHDHHGYIGKFQSVIGLMKLKTLTLKPRHRIASEIQEIKLRIYGIKERIDRYNFQFSEQEQGLSIKYPDRLGSLFVDEGEIVGFEKPRDEIVGWLVDGDERSRSVISVVGMGGLGKTTLAKNVFDDQQVKGCFDCRAFLVVSQSYSVEALVRNMMLQFFEETKEPLPQGINMMDKTTLITVARSYLQRKRYVIYFDDVWKVEFWDEIQLATPDNKLGSRIMITTRNLDVANYCRKDSRVQVHKLQPLPPNKAWELFCNKAFRFDFDGSCPSELKDISDDIVQKCEGLPLAIVAIGGLLSTKDKTVSEWKKLCQNLSLELDRNPHLANLTRILGMSYDDLPHYLKSCILYFGIYPEDYSIRSSRLIRQWIAEGFVKHEVGKSLEEVGEEYLTELINRSLVQVSRVHYDGKATSCRIHDLLREMIMRKMKDLSFCHVVDEDDHEQISDVIIRRLAINTSSNNMLRSIENFPLRSLYIFDVLIKFSDYFGSKFFAKSKLLKVLDLEGALLDYVPDDIGNMFHLKYLSLRYTNVKNLPKSIGKLQNLETLDLKRTLNSRVTK 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00531 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 439 IPR027417 -
Tsu01g00531 647 Coils Coil 17 37 - -
Tsu01g00531 647 Gene3D - 336 424 IPR042197 -
Tsu01g00531 647 Gene3D - 163 330 IPR027417 -
Tsu01g00531 647 Gene3D - 4 121 - -
Tsu01g00531 647 Pfam Rx N-terminal domain 6 88 IPR041118 -
Tsu01g00531 647 Gene3D Ribonuclease Inhibitor 543 645 IPR032675 -
Tsu01g00531 647 PRINTS Disease resistance protein signature 274 288 - -
Tsu01g00531 647 PRINTS Disease resistance protein signature 627 643 - -
Tsu01g00531 647 PRINTS Disease resistance protein signature 373 387 - -
Tsu01g00531 647 PRINTS Disease resistance protein signature 194 209 - -
Tsu01g00531 647 Pfam NB-ARC domain 174 427 IPR002182 GO:0043531
Tsu01g00531 647 CDD RX-CC_like 2 136 IPR038005 -
Tsu01g00531 647 PANTHER DISEASE RESISTANCE PROTEIN RP 27 639 IPR044974 GO:0006952
Tsu01g00531 647 SUPERFAMILY L domain-like 505 640 - -
Tsu01g00531 647 Gene3D - 425 516 IPR036388 -
Tsu01g00531 647 PANTHER - 27 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00531 Tsu-Chr1 4658413 4661325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00531 194 392 WRKY Transcription Factor Family AT5G45050 27.586 1.94e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00531 K13457 - gmx:100801561 695.656