Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00528 ATGCCCAAAATGAAGCATCTACTTCGAAAGCTTCACATCGGTGGTGGCGCCACCGCAACTGCCACCGCGCCATTACCGCTTTCTCATTCCGATTCTCACActcctcttcctcctcctccttcttcttctacaTCTCTTAGTCCTTCTCCATCTCCTTCACCTTCTCCTTCTCCAACCGTTGTTAATGTTAACAATTCTCGAAACGACGCTGATATTGGTGTCAGTGTCAACGATTTTAATCTTTTGCAGGAAGAAGAGTTTCAGGTTCAATTGGCTCTTGCTATTAGTGCTTCTGATTCCGATCCTCATGATGTTGATGAATCTGCTCAGATCGATGCTGCTAAACAGATCAGCCTTGGTTATTCTGCTTCGATTACGGATACTCCTGCAATTGTTCAGTTTCAATCGCTTCGTTATTGGAATTACAACGTCATTGCTTATGACGAGAAAGTGATGGATGGGTTTTATGATGTCTATGGGATCGACTCAAGTTTAATTGAACGGGGAATGATGCCATTGCTGGTGGATTTGAAAACTGTGCCCACCTCACGAAATGTGGATTATGAAGTGATCTCGGTGAACCGCATTGTTGATGTTGAGCTATGTCAGCTTGAGAAAAAAGCCTGTGCCTTGTTTGAAGAGTGTTCTGTTTCTGAACTAGGACTGTTTTTGAGTGGCTTAATCCAGAAACTTGCTGATGTTGTTGTTAATAGAATGGGTGGACCGGTCAGCAGTGCTGATAAAATCACGACAAAGTGGGCTCTGAGAAGTCGTGAACTGCGAGATTCTTTAAGGACCGTCGTTCTTCCTCTTGGCTGTCTAGATGTTGGACTTTCACGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAATATTCCTTGCATGCTTGTAAAAGGGAGCTATTACACAGGAACTGATGACGGGGCTGTGAATTTGATCAAAGCTGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGTACTCTTATTCCTGCCGAGGTGCCCAGCAGTCAGATCCAAAACTATGGTTTTGCTGGTAGGGATTTCGCAGAGATTGCAGGACAACCTAACAACTTATATCCAATGCTTGGTAATGAAACTGATGTTCTGGGAGTATTATCTGACGGTACCATAGGGAGGGTCCGGACAAAAGAATTAGTAGAAATCGGCAGTCAAACAAAACCAGAAAAAATGAATCATGTTAAGGTAAATGAAGCAGGGAGATATAAGCATACAGCGGCGTATGAATGCTCGTCACATCCAGAATCATCACATGCAGAAAATATGCATGTAAAAAATGTCTCCCAGTATGTCCTTAGTGCTGCAAAGAACCCAGAGTTTGCCTCAAAACTGCACACTATTCTTTTAGAAAGCGGTGCATCACCTCCTTCTGATCTTTTTTCAGATATGAATTCCCGAGATAGGGGTTTAGATACTGTTCAAGCTGACCAAAATAGGCTGTTATTAAGTTATGATAAGTCTCTCATACTCCCTCAAGGAGTGGGCCCTGCTGGCAATACTAAGTTATATCAATCGGCTGACCAGTTAACCGAACAGCAAAAAGAATTACACACTGATGCCACTGAATTTTATGATTCTTCACAGAGTAGTGGTGCAAGGAATGCTTTTGCAACTGTTTCCGGTAATTATAGTGATATTGAGCAATCTAATCCATTAATTGTTGACTTCACTTCTTTTAATACACATAAAGAAAAGTGTCCTGAGTCTTCCTTGCCCAAGGCTGCCCTTTCTTGCAAAAGGCATAATGGCGTTGAATGTTTTTGTGATGATGACGAAAGTGGTTCTAGAAATGAGGCTGGAGCTTCTTTGAATAACGTTGAACTTGGGAATGATTCAGCCATTCAAATAAACGAGACAGTCGGTGGAGATTCTATCCTATATGATGACAGTAAAAGCAAGAAAGTTCACCCAATACTTGGTGAAGACACACAATGGGAAGTTCAGTGGGAGGATCTTCGCATTGGCGAGCGTATCGGTATCGGTTCTTACGGCGAAGTTTACCGTGCTGATTGCAATGGCACCGAAGTTGCTGTAAAGAAGTTTCTAGACCAAGATGTCTCTGGTGACGCACTAGATCAGTTCAAATCGGAAATTGAGATTATGCTAAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCTCCACATTTCTCTATCTTGACAGAGTTTCTTCCTAGAGGCAGTTTATATAGGCTGTTGCATCGTCCCAATCTTGTACTTGATGAGAAGAGACGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACCAGCCATCCTCCCGTTGTCCATCGAGATTTAAAGACTCCAAACCTTCTTGTTGACAGACATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGTATGAAGCACCATACATATTTGTCATCAAAGTCATGTGCTGGAACGCCTGAGTGGATGGCGCCAGAAGTCTTACGGAACGAGCCTGCCAATGAAAAGTGTGATGTATATAGTTTTGGTGTGATCTTGTGGGAGTTAACTACCACGAAAATCCCATGGCATGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGCCTTGAAATTCCAGAAGAAATGGATCCAGTAGTAGCTCAAATTATACGTGATTGCTGGCAAACGGAGCCACACTTGCGACCATCCTTCTCACAACTGATGTCCCGTCTTTATCGTCTTCGCCAATTGGTTGTCCGTAAAACGGGCTCTACGCAATAA 2799 0.4255 MPKMKHLLRKLHIGGGATATATAPLPLSHSDSHTPLPPPPSSSTSLSPSPSPSPSPSPTVVNVNNSRNDADIGVSVNDFNLLQEEEFQVQLALAISASDSDPHDVDESAQIDAAKQISLGYSASITDTPAIVQFQSLRYWNYNVIAYDEKVMDGFYDVYGIDSSLIERGMMPLLVDLKTVPTSRNVDYEVISVNRIVDVELCQLEKKACALFEECSVSELGLFLSGLIQKLADVVVNRMGGPVSSADKITTKWALRSRELRDSLRTVVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQIQNYGFAGRDFAEIAGQPNNLYPMLGNETDVLGVLSDGTIGRVRTKELVEIGSQTKPEKMNHVKVNEAGRYKHTAAYECSSHPESSHAENMHVKNVSQYVLSAAKNPEFASKLHTILLESGASPPSDLFSDMNSRDRGLDTVQADQNRLLLSYDKSLILPQGVGPAGNTKLYQSADQLTEQQKELHTDATEFYDSSQSSGARNAFATVSGNYSDIEQSNPLIVDFTSFNTHKEKCPESSLPKAALSCKRHNGVECFCDDDESGSRNEAGASLNNVELGNDSAIQINETVGGDSILYDDSKSKKVHPILGEDTQWEVQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDVSGDALDQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRLLHRPNLVLDEKRRLRMALDVAKGMNYLHTSHPPVVHRDLKTPNLLVDRHWVVKVCDFGLSRMKHHTYLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTKIPWHGLNPMQVVGAVGFQNKRLEIPEEMDPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRLRQLVVRKTGSTQ 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00528 932 CDD STKc_MAP3K-like 671 917 - -
Tsu01g00528 932 Gene3D Transferase(Phosphotransferase) domain 1 744 928 - -
Tsu01g00528 932 ProSiteProfiles Protein kinase domain profile. 665 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00528 932 Gene3D Phosphorylase Kinase; domain 1 658 742 - -
Tsu01g00528 932 PANTHER SERINE-THREONINE PROTEIN KINASE 72 927 - -
Tsu01g00528 932 SMART serkin_6 665 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00528 932 SUPERFAMILY Protein kinase-like (PK-like) 653 918 IPR011009 -
Tsu01g00528 932 MobiDBLite consensus disorder prediction 31 57 - -
Tsu01g00528 932 PRINTS Tyrosine kinase catalytic domain signature 844 866 IPR001245 GO:0004672|GO:0006468
Tsu01g00528 932 PRINTS Tyrosine kinase catalytic domain signature 825 835 IPR001245 GO:0004672|GO:0006468
Tsu01g00528 932 PRINTS Tyrosine kinase catalytic domain signature 888 910 IPR001245 GO:0004672|GO:0006468
Tsu01g00528 932 PRINTS Tyrosine kinase catalytic domain signature 739 752 IPR001245 GO:0004672|GO:0006468
Tsu01g00528 932 PRINTS Tyrosine kinase catalytic domain signature 778 796 IPR001245 GO:0004672|GO:0006468
Tsu01g00528 932 MobiDBLite consensus disorder prediction 11 66 - -
Tsu01g00528 932 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Tsu01g00528 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Tsu01g00528 932 Pfam Ethylene-responsive protein kinase Le-CTR1 133 336 - -
Tsu01g00528 932 Pfam Protein tyrosine and serine/threonine kinase 665 917 IPR001245 GO:0004672|GO:0006468
Tsu01g00528 932 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 72 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00528 Tsu-Chr1 4624079 4633108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00528 1 931 MAP Kinase Kinase Kinase AT5G11850 50.787 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Tsu01g00528 PK_Tyr_Ser-Thr 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00528 K04424 - gmx:100779137 1317.37