Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00520 ATGAAGGGTTCTCAAAGGACAAGGCAAGTACAAATTTTGCAAAGTTGTCAAATGTATCCTAAAGATGCAGAGAAACATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGCCAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGACTTTGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAGGCCTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAATTGTTTAATATCAATTGA 279 0.3584 MKGSQRTRQVQILQSCQMYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQLFNIN 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00520 92 MobiDBLite consensus disorder prediction 69 92 - -
Tsu01g00520 92 PANTHER HOMEOBOX PROTEIN ATH1 19 88 - -
Tsu01g00520 92 Gene3D - 5 82 - -
Tsu01g00520 92 SMART HOX_1 2 57 IPR001356 GO:0003677
Tsu01g00520 92 ProSiteProfiles 'Homeobox' domain profile. 19 53 IPR001356 GO:0003677
Tsu01g00520 92 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 88 - -
Tsu01g00520 92 Pfam Homeobox KN domain 19 49 IPR008422 GO:0003677|GO:0006355
Tsu01g00520 92 CDD homeodomain 9 53 IPR001356 GO:0003677
Tsu01g00520 92 SUPERFAMILY Homeodomain-like 8 63 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00520 Tsu-Chr1 4559904 4562179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00520 19 66 Homeobox Transcription Factor Family AT4G32980 91.667 1.66e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tsu01g00520 Homeobox_KN 1.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00520 - - aip:107605517 123.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00520 01 4559904 4562179 Tsu01g00520 01 4559904 4562179 ECH