Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00519 ATGGAGAATGGTGTATACAATGCTCCAATGAACATGGTTGGTCAAATTTCAAATGTCATGGAAGATATCACACAACATTTAACACAAAAGCCACTCATTCATTGCTATTCATTTGATCTTAACAATCAAAACATTATAAATGGAATCCCAATACTTTCTGCTgaacaaaatcaacaacatgTTGATGTTAGTAGTAGTAGTTTCATAAATCATCCAAATATTGCTGATTCTACTTCATTTGTTACATCACAACATGGAAGGACTATTGTGGAAAATCCCTCAAATCTCATTGTTAACAACAATGACTTTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAATTTTGAACCTATGGTGGTTCCATACATGTTCAATAATTGGAATGATGCATCAAACTCAAACCCTTTGTGTGCAACTTTTGGTGATAATAGTAACCATGTTAACAAGTTTTTGAAAGCTCAAGAGGGTAATGATAGTGGATTCATGTCATATTCATCGATTTCAAACATTGATCCGAACGGATGGCGATTGTCACATGCTGCAAGCTTAACAAATCTTGCTTATAGTTCATCAAATTGTAGCAATGAACTTTCACTAAGTCCTGCAACATCTCCAAATTCAGGTCAGTGTTCAGAGATTAGTTGCTCTGACTTGACTCATAGCATGAATGGAACAAGATCAGGTTTGGAACAAGCCTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTTAAATTTTCGCCGGCAATATTAGGATCGAGATACCTTGCTGTAATTCAGGAGATACTTGTTCAAATTGCAACATATTCATTTGAAAATCTAAATCTTGATGAGATAAATCATTCGGCTTCCGGTGTCAGAGGAGGACGAGGAAATAAATCAAGTTCCTCGAACGCAGACAAGCGAAGGATAGGAGTAAACCGCGACACTAGTTCTATGTCAGAAGCATATGCTGATTCTTCATTGCAAAGACATGCTGCTGAATCAAAGAAATCACAACTTCTGATGCTTCTACAGCTGGTGGACAGTCAATATAGTCAATGTTTGGCTGAGATTCACACTGTTGTATCTGCATTTCATGCTGCTACTGAGCTTAATCCTCAAATACATGCGCATTTCGCTGTTAAAACAGTTGATCGACTATATAAAGATTTGAGAGAGAGGATTAGCAATCATATTCTTGCCATGGGATCTAATTTTAACAGCTCATGGTCAGAAGAGGATAATGAATTTTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTTCAACAGTTGAAAAGGAAAGACCAGTTATGGAGGCCGCAAAGGGGTTTGCCTGAAAAATCTGTTTCGGTTCTTCGTGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAACATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGCCAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGACTTTGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAGGCCTGTCGAAACGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAATTGTTTAATATCAATTGA 1617 0.3655 MENGVYNAPMNMVGQISNVMEDITQHLTQKPLIHCYSFDLNNQNIINGIPILSAEQNQQHVDVSSSSFINHPNIADSTSFVTSQHGRTIVENPSNLIVNNNDFSVPARIGLQENFEPMVVPYMFNNWNDASNSNPLCATFGDNSNHVNKFLKAQEGNDSGFMSYSSISNIDPNGWRLSHAASLTNLAYSSSNCSNELSLSPATSPNSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATYSFENLNLDEINHSASGVRGGRGNKSSSSNADKRRIGVNRDTSSMSEAYADSSLQRHAAESKKSQLLMLLQLVDSQYSQCLAEIHTVVSAFHAATELNPQIHAHFAVKTVDRLYKDLRERISNHILAMGSNFNSSWSEEDNEFSVETSFIQKQWALQQLKRKDQLWRPQRGLPEKSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQLFNIN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00519 538 SMART prehox3 249 396 IPR006563 -
Tsu01g00519 538 MobiDBLite consensus disorder prediction 292 306 - -
Tsu01g00519 538 MobiDBLite consensus disorder prediction 287 315 - -
Tsu01g00519 538 Pfam Homeobox KN domain 456 495 IPR008422 GO:0003677|GO:0006355
Tsu01g00519 538 CDD homeodomain 439 499 IPR001356 GO:0003677
Tsu01g00519 538 Pfam Associated with HOX 255 395 IPR006563 -
Tsu01g00519 538 PANTHER HOMEOBOX PROTEIN ATH1 16 534 - -
Tsu01g00519 538 ProSiteProfiles 'Homeobox' domain profile. 436 499 IPR001356 GO:0003677
Tsu01g00519 538 SUPERFAMILY Homeodomain-like 440 508 IPR009057 -
Tsu01g00519 538 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 534 - -
Tsu01g00519 538 SMART HOX_1 439 503 IPR001356 GO:0003677
Tsu01g00519 538 Gene3D - 442 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00519 Tsu-Chr1 4548523 4551322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00519 195 512 Homeobox Transcription Factor Family AT4G32980 55.937 5.92e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu01g00519 POX 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00519 - - gmx:100812648 631.328