Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00496 atgAATTTTTATGATACCTCCAACACAAGTTTTCATGTTGAACTTGATCTTGGTCTTGGTCTTGCCCTTCATGATCAATATTTTGATGGCCACAAGAAGATAGAAAGCAAGAAAAAAGAGGAGAatctatcaaaatataataaagctTATCCATCTCTTACTTTAGGACCATCAaatgaagaggatgaagaaaataataattatattattatagattcagCTTCAAAGATTGAGTCTTGTGATCAAAATTTACTTACTTCTCCAAGCATAGAGTCGTCATTTTCGAACTCTACAAGCATGAAGAAGGAGACATGTGAGGAACTTGAGGTAGAGATTGAGAAGGTTCTAATTACAAAGGTTGGAAATGTTGATGAAGATGGTAATCCAAGGAAGAAACTTAGGCTCACAAAAGAACAATCAGAAGTGTTGGAGGAAAATTTCAAAGAGCATTCTACTCTTAATCCGAAGCAAAAGCAAGCATTAGCACAAAAGCTGAATCTACAGGCAAGGCAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGACAAAACTGAAACAAACGGAATCAgattttgaagaattaaagaaaTGTTGCGAAACTCTAACAGAAGAGAACAAAAAGTTACAAAAGGAGCTACAAGAATTGAAGTCAATGCAAACAGTGGCAACAACTACAACACCTTTTTATATGCAGATTCCAGCAGCAACACTTACAATATGTCCTTCTTGTGAGACAATTTGTGGTGGTAACACTAACAACAACAATGGTACCACAACATTGCTTATTGGCTCAAAGGCTCATCATGGTctctataaaaataataatgatgataattaTCAATTCCCTCACACATCATCTGCAGCATGTTAA 873 0.3288 MNFYDTSNTSFHVELDLGLGLALHDQYFDGHKKIESKKKEENLSKYNKAYPSLTLGPSNEEDEENNNYIIIDSASKIESCDQNLLTSPSIESSFSNSTSMKKETCEELEVEIEKVLITKVGNVDEDGNPRKKLRLTKEQSEVLEENFKEHSTLNPKQKQALAQKLNLQARQVEVWFQNRRARTKLKQTESDFEELKKCCETLTEENKKLQKELQELKSMQTVATTTTPFYMQIPAATLTICPSCETICGGNTNNNNGTTTLLIGSKAHHGLYKNNNDDNYQFPHTSSAAC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00496 290 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Tsu01g00496 290 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 12 288 - -
Tsu01g00496 290 Pfam Homeobox associated leucine zipper 186 219 IPR003106 GO:0006355|GO:0043565
Tsu01g00496 290 Coils Coil 178 222 - -
Tsu01g00496 290 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Tsu01g00496 290 PANTHER - 12 288 - -
Tsu01g00496 290 CDD homeodomain 129 187 IPR001356 GO:0003677
Tsu01g00496 290 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Tsu01g00496 290 Gene3D - 121 192 - -
Tsu01g00496 290 CDD bZIP 179 218 - -
Tsu01g00496 290 SUPERFAMILY Homeodomain-like 126 187 IPR009057 -
Tsu01g00496 290 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Tsu01g00496 290 SMART HOX_1 128 190 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00496 Tsu-Chr1 4313195 4315751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00496 114 247 Homeobox Transcription Factor Family AT4G37790 67.153 1.16e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu01g00496 Homeodomain 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00496 K09338 - gmx:100797650 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00496 01 4313195 4315751 Tsu01g00496 01 4313195 4315751 ECH