LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00472	ATGCCTTCATTTGAGATTAACAATGCTTTGATGGGTTTTGAAACATCTTTCAAAGGTTGTGTTTTTAGTGTCTTAGACACTGAAAAAAACATGGATCTAAAGTTAATGATTGAGGAACTAGATACAACAATTCATGATGTTCCTTCTGTGTTTATATGTCCAATTTCACTTGAACCAATGCAAGAACCAGTTACACTTTGTACTGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCATAAAACATGTCCAACAACTATGCAAGAGCTTTGGGATGATTCAATTACTCCTAACAACACTCTCAAACAATTGATTCTCTCTTGGTTCTTAAACAAGTACTTAGCAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGTTTTGGAAACTTTGGAGACACTTAAAAAGGTAAAAGGTCAAAGCAGAGTCAAAGCTCTTAAAGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACATTGTTGGAAAATGATGgtgttggtttggtttgttcTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATAATTGTGAATTTGGATTTAAGTTTAGAATTCAAGAGAAAAAATCTTATGCATCCATCTAAAGTTTCATTAGTTGTTGATATCATGAATGAAGGAACAATTGAAACAAAGATGAATTGTGCTAAGTTGATTGAAATGTTGTTGatggaagaagaaggaaaagaagaaggaaatgAGGGTAAGATTGAGATTGTGTCAAGTTTAAGTCTTTTGGTTGGATTATTGAGATTGGTAAGAGATAAGAAACATCCAAACAGTGTCTTAATAGGTCTCACATTGCTAAAAAAGGTATTATCTTCACATGAAACAGTTAGAAATTCTGTTATAAGTATAGGAGCAATTCCTcaattgattgagattttacCAAATTTGAACAATGAATGTTTGGAGATAGCACTTTATATATTGGAAATATTGTCAACAATTGAAGAAGGGAAATTGGCTTTGAAAGAATGTCCTAATATTATTCCTAATGTGGTTAAGATGTTGATGAGAGTATCAGAAAATTGTACACAATTTGCATTATCAATATTGTGGGCTATTTACAAACTTGCACCTGAAGAATGTGCTTCAAAAGCTGTGGAAGCTGGTTTGGCTTCAAAATTATTGCTTGTGATTCAAAGTGGTTTAGCATCGTCTTCACAGGTTAGGGTTACCAACACAGTACAGCTGCTGCAACCAACCATGGCGGAACAAaCTGAGAAGGCTTTTTTGAAGCAACAGAAAGTGTTCTTAAGCTCGAAGGCATCTGGAAAGGGGAAGAGACCTGGAAAGGGTGGTAATCGATTCTGGAAATCTATTGGCCTTGGTTTTAAGACTTCAAGAGAAGCCATTGAagGAACCTATATTGACAAGAAGTGCCCATTCACTGGCAATGTCTCAATCCGAGGTCGTATTCTTGCCGGTACTTGTCATAGTGCTAAGATGAATAGGACCATTATTGTTAGGAGGAATTATCTTCATTTCATTAAGAAGTATCAGAGaTATGAGAAGCGTCATTCTAATATCCCCGCACACGTATCACCTTGTTTCCGAGTGAAGGAAGGAGATCATGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTTAGATTCAATGTATTGAAAGTGATCCCGGCCGGATCTTCTAGTGGTGCAAAGAAGGCGTTTTCAGGAATATGA	1749	0.3459	MPSFEINNALMGFETSFKGCVFSVLDTEKNMDLKLMIEELDTTIHDVPSVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLILSWFLNKYLAMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTLLENDGVGLVCSLLGPFTSHVVGCEAIGIIVNLDLSLEFKRKNLMHPSKVSLVVDIMNEGTIETKMNCAKLIEMLLMEEEGKEEGNEGKIEIVSSLSLLVGLLRLVRDKKHPNSVLIGLTLLKKVLSSHETVRNSVISIGAIPQLIEILPNLNNECLEIALYILEILSTIEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGLASSSQVRVTNTVQLLQPTMAEQTEKAFLKQQKVFLSSKASGKGKRPGKGGNRFWKSIGLGFKTSREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFSGI	582

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu01g00472	582	ProSiteProfiles	U-box domain profile.	46	120	IPR003613	GO:0004842\|GO:0016567
Tsu01g00472	582	Gene3D	-	417	581	-	-
Tsu01g00472	582	TIGRFAM	uS17_arch: ribosomal protein uS17	478	566	IPR028333	-
Tsu01g00472	582	SMART	Ubox_2	50	113	IPR003613	GO:0004842\|GO:0016567
Tsu01g00472	582	PANTHER	WDSAM1 PROTEIN	24	418	IPR045185	GO:0061630
Tsu01g00472	582	PRINTS	Ribosomal protein S17 family signature	544	554	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
Tsu01g00472	582	PRINTS	Ribosomal protein S17 family signature	554	561	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
Tsu01g00472	582	PRINTS	Ribosomal protein S17 family signature	511	534	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
Tsu01g00472	582	SUPERFAMILY	ARM repeat	141	249	IPR016024	-
Tsu01g00472	582	ProSitePatterns	Ribosomal protein S17 signature.	544	556	IPR019979	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00472	Tsu-Chr1	4038370	4043264	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00472	1	419	U-box Gene Family	AT3G49810	55.353	1.38e-160	464

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00472	-		-	gmx:100803878	539.65

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g00472	01	4038370	4043264	Tsu01g00472	01	4038370	4043264	ECH

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