Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00472 ATGCCTTCATTTGAGATTAACAATGCTTTGATGGGTTTTGAAACATCTTTCAAAGGTTGTGTTTTTAGTGTCTTAGACACTGAAAAAAACATGGATCTAAAGTTAATGATTGAGGAACTAGATACAACAATTCATGATGTTCCTTCTGTGTTTATATGTCCAATTTCACTTGAACCAATGCAAGAACCAGTTACACTTTGTACTGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCATAAAACATGTCCAACAACTATGCAAGAGCTTTGGGATGATTCAATTACTCCTAACAACACTCTCAAACAATTGATTCTCTCTTGGTTCTTAAACAAGTACTTAGCAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGTTTTGGAAACTTTGGAGACACTTAAAAAGGTAAAAGGTCAAAGCAGAGTCAAAGCTCTTAAAGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACATTGTTGGAAAATGATGgtgttggtttggtttgttcTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATAATTGTGAATTTGGATTTAAGTTTAGAATTCAAGAGAAAAAATCTTATGCATCCATCTAAAGTTTCATTAGTTGTTGATATCATGAATGAAGGAACAATTGAAACAAAGATGAATTGTGCTAAGTTGATTGAAATGTTGTTGatggaagaagaaggaaaagaagaaggaaatgAGGGTAAGATTGAGATTGTGTCAAGTTTAAGTCTTTTGGTTGGATTATTGAGATTGGTAAGAGATAAGAAACATCCAAACAGTGTCTTAATAGGTCTCACATTGCTAAAAAAGGTATTATCTTCACATGAAACAGTTAGAAATTCTGTTATAAGTATAGGAGCAATTCCTcaattgattgagattttacCAAATTTGAACAATGAATGTTTGGAGATAGCACTTTATATATTGGAAATATTGTCAACAATTGAAGAAGGGAAATTGGCTTTGAAAGAATGTCCTAATATTATTCCTAATGTGGTTAAGATGTTGATGAGAGTATCAGAAAATTGTACACAATTTGCATTATCAATATTGTGGGCTATTTACAAACTTGCACCTGAAGAATGTGCTTCAAAAGCTGTGGAAGCTGGTTTGGCTTCAAAATTATTGCTTGTGATTCAAAGTGGTTTAGCATCGTCTTCACAGGTTAGGGTTACCAACACAGTACAGCTGCTGCAACCAACCATGGCGGAACAAaCTGAGAAGGCTTTTTTGAAGCAACAGAAAGTGTTCTTAAGCTCGAAGGCATCTGGAAAGGGGAAGAGACCTGGAAAGGGTGGTAATCGATTCTGGAAATCTATTGGCCTTGGTTTTAAGACTTCAAGAGAAGCCATTGAagGAACCTATATTGACAAGAAGTGCCCATTCACTGGCAATGTCTCAATCCGAGGTCGTATTCTTGCCGGTACTTGTCATAGTGCTAAGATGAATAGGACCATTATTGTTAGGAGGAATTATCTTCATTTCATTAAGAAGTATCAGAGaTATGAGAAGCGTCATTCTAATATCCCCGCACACGTATCACCTTGTTTCCGAGTGAAGGAAGGAGATCATGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTTAGATTCAATGTATTGAAAGTGATCCCGGCCGGATCTTCTAGTGGTGCAAAGAAGGCGTTTTCAGGAATATGA 1749 0.3459 MPSFEINNALMGFETSFKGCVFSVLDTEKNMDLKLMIEELDTTIHDVPSVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLILSWFLNKYLAMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTLLENDGVGLVCSLLGPFTSHVVGCEAIGIIVNLDLSLEFKRKNLMHPSKVSLVVDIMNEGTIETKMNCAKLIEMLLMEEEGKEEGNEGKIEIVSSLSLLVGLLRLVRDKKHPNSVLIGLTLLKKVLSSHETVRNSVISIGAIPQLIEILPNLNNECLEIALYILEILSTIEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGLASSSQVRVTNTVQLLQPTMAEQTEKAFLKQQKVFLSSKASGKGKRPGKGGNRFWKSIGLGFKTSREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFSGI 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00472 582 ProSiteProfiles U-box domain profile. 46 120 IPR003613 GO:0004842|GO:0016567
Tsu01g00472 582 Gene3D - 417 581 - -
Tsu01g00472 582 TIGRFAM uS17_arch: ribosomal protein uS17 478 566 IPR028333 -
Tsu01g00472 582 SMART Ubox_2 50 113 IPR003613 GO:0004842|GO:0016567
Tsu01g00472 582 PANTHER WDSAM1 PROTEIN 24 418 IPR045185 GO:0061630
Tsu01g00472 582 PRINTS Ribosomal protein S17 family signature 544 554 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu01g00472 582 PRINTS Ribosomal protein S17 family signature 554 561 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu01g00472 582 PRINTS Ribosomal protein S17 family signature 511 534 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu01g00472 582 SUPERFAMILY ARM repeat 141 249 IPR016024 -
Tsu01g00472 582 ProSitePatterns Ribosomal protein S17 signature. 544 556 IPR019979 GO:0003735|GO:0005840|GO:0006412
Tsu01g00472 582 Pfam Ribosomal_S17 N-terminal 427 495 IPR032440 -
Tsu01g00472 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 124 IPR013083 -
Tsu01g00472 582 SUPERFAMILY RING/U-box 35 116 - -
Tsu01g00472 582 SUPERFAMILY Nucleic acid-binding proteins 491 570 IPR012340 -
Tsu01g00472 582 Gene3D - 298 416 IPR011989 -
Tsu01g00472 582 SUPERFAMILY ARM repeat 262 402 IPR016024 -
Tsu01g00472 582 CDD RING-Ubox_PUB 51 93 IPR045210 -
Tsu01g00472 582 Gene3D - 125 297 IPR011989 -
Tsu01g00472 582 Pfam U-box domain 47 116 IPR003613 GO:0004842|GO:0016567
Tsu01g00472 582 Pfam Ribosomal protein S17 497 565 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tsu01g00472 582 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00472 Tsu-Chr1 4038370 4043264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00472 1 419 U-box Gene Family AT3G49810 55.353 1.38e-160 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00472 - - gmx:100803878 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00472 01 4038370 4043264 Tsu01g00472 01 4038370 4043264 ECH