Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00423 ATGCGTGGATTGCAAAAATCGAAGAGAGTTTCATGGGCCTCAGGTTTAGATCTTTGTCAGGTTAAGTTATTCTTATCAGAGGAATCTCCTTCACAAGTTGGGTTGAATTCTCAAGATCACCTCCAAGCAAAGATATCGTCCTTATTGCATCAAGGAGAAGCTAGTTCTGATGATATTTtgcctcctggttttgagggaACTCATGCTTCAAGTCAGTTTGATATTAAGCCGTCCCAAATACCAGTTATTAACTGGATTAATCCACCTAAGATTGTGCTAGATCTCACATGGCAAGTGGTGGCTGGGGAAGAAAGCAAAGAGATAGTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTGCTGTTCCAGTGAATGTCGAAGATTCTCATTACATTGATGATCATACTGTTGTAATCCCAATTACGCCTGTTGAAGACGGGGATGTGGCAGCAGATACATTATCTCCTGGTATATTAGACGGTTCGAACGCTGCTACGAGTATGTCAATGGTGTCTAATGTAGCTGCTGCATCTGTTGCTTTAACTAGCTTAGTGAAGAACAGTGAACAAGGTAATTTGATTGACCGTGAATTACTCAATAATATTCTCAACAATCCTGAAGTGATTGAGAAGTTGGTTAGAGATTATGGAGCGCAAAATAGTGCACAATATGTACAAAACATGGGATCATCTTCAGGAGTTTATTCATATGCCCCTAATCGTGTTAACCAAGTTGAAACCACTACAACCTCATCAAACGCTTTTTCATCCACTTCCTATACTCACACAACTGGAGGTCAGATGGCACCAACTATTTCTACCCAATGGCATCCTAGGCCTGTAATGAGTTCGGCCATTGCTGCTACTTCTGTTGAGGCCCCTTCAACAAAAGATGTAAACTACTATAAGAGCTTGATTCAACAACATGGAGGAGATAAACAAGAAGCACTTCCATACTCCTCCAATAATCGTCAGAACCAACCATTATCAAACTATGATACAGTGCACAATTTTAGAGCAAAAGGGTCAAAAGCAAAGATAATGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGGTGTCGGAATGGAGCTAATTGTGCCTTTCAGCACGATGCATCATATCAGCCACAACAAGGTAATCCTGTGTCAGGGATACAAAGTTCAAAGAGAATGAAAATGGATAATGAGATCAGCAGTTAA 1239 0.3955 MRGLQKSKRVSWASGLDLCQVKLFLSEESPSQVGLNSQDHLQAKISSLLHQGEASSDDILPPGFEGTHASSQFDIKPSQIPVINWINPPKIVLDLTWQVVAGEESKEIVDQHQREMRVLEAIYPRISSIPPNPAVPVNVEDSHYIDDHTVVIPITPVEDGDVAADTLSPGILDGSNAATSMSMVSNVAAASVALTSLVKNSEQGNLIDRELLNNILNNPEVIEKLVRDYGAQNSAQYVQNMGSSSGVYSYAPNRVNQVETTTTSSNAFSSTSYTHTTGGQMAPTISTQWHPRPVMSSAIAATSVEAPSTKDVNYYKSLIQQHGGDKQEALPYSSNNRQNQPLSNYDTVHNFRAKGSKAKIMKPCIFFNSSRGCRNGANCAFQHDASYQPQQGNPVSGIQSSKRMKMDNEISS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00423 412 MobiDBLite consensus disorder prediction 386 412 - -
Tsu01g00423 412 ProSiteProfiles Zinc finger C3H1-type profile. 358 386 IPR000571 GO:0046872
Tsu01g00423 412 SUPERFAMILY CCCH zinc finger 363 386 IPR036855 GO:0046872
Tsu01g00423 412 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 178 - -
Tsu01g00423 412 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 181 407 - -
Tsu01g00423 412 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 178 - -
Tsu01g00423 412 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 181 407 - -
Tsu01g00423 412 MobiDBLite consensus disorder prediction 261 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00423 Tsu-Chr1 3553696 3558680 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu01g00423 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00423 - - cam:101501814 648.662