Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00420 CTTGGGGAGATGAATGGAAAAATGATTGTCAGCAAACCTCTTTATGTTGCTATTGCACAGAGAAAGGAAGATAGAAAGGCAAGGTTGCAGGCACAGTTTTCACAAATGAGGCCTGTTGCAATTTCACCTTCTGTTGCTCCTCGAATGCCACTTTACCCTCCTGGCGCTTCTGGTATTGGACAACAATTTATGTATGGTCAAGGACCACCAGCCATGATGCCTCCACAAGCTGGATTTGGATATCAGCAGCAACTTGTTCCTGGGATGAGACCTGGCGGTGGTCCTATGCCAAGCTACTTTGTTCCAATGGTTCAGCAGGGGCAACAAGGTCAGCGTCCTGGTGGACGCCGAGGTCCTGTTCAACAACCCCAGCAGCAAGTGCCAATAATGCAGCAGCAGATGCTTCCAAGGCAACGTGTTTATCGCTACCCTCCTGGCCGCAACAACATTCAAGATGCCCCAGTGGCTGGAGGAATGATGTCCTATGACATGGTAGGTCTTCCACTCCGTGATGTTGTGTCGCCTATGCCCATTCATGCTTTGGCTACAGCACTTGCGAATGCTCCCCCAGAACAGCAAAGGACTATGCTTGGAGAGGCTTTGTATCCACTAGTAGATCAGCTGGAACATGATTCTGCAGCTAAGGTTACTGGTATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTTATTGAGTCACCAGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGACGTGCTGAGAAATGTTGCTCAACAGCAAGGGAACAGCCCAGCAGATCAACTTGCTTCACTTTCTCTCAACGATAATCTATAA 822 0.4878 LGEMNGKMIVSKPLYVAIAQRKEDRKARLQAQFSQMRPVAISPSVAPRMPLYPPGASGIGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGPVQQPQQQVPIMQQQMLPRQRVYRYPPGRNNIQDAPVAGGMMSYDMVGLPLRDVVSPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQGNSPADQLASLSLNDNL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00420 273 PANTHER POLYADENYLATE-BINDING PROTEIN 1 259 - -
Tsu01g00420 273 SUPERFAMILY PABC (PABP) domain 125 268 IPR036053 GO:0003723
Tsu01g00420 273 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 177 254 IPR002004 GO:0003723
Tsu01g00420 273 Gene3D - 173 256 - -
Tsu01g00420 273 MobiDBLite consensus disorder prediction 254 273 - -
Tsu01g00420 273 SMART poly_2 189 252 IPR002004 GO:0003723
Tsu01g00420 273 PANTHER RNA BINDING PROTEIN 1 259 - -
Tsu01g00420 273 Pfam Poly-adenylate binding protein, unique domain 185 249 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00420 Tsu-Chr1 3505549 3519880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00420 1 273 Eukaryotic Initiation Factors Gene Family AT2G23350 61.806 4.27e-103 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00420 K13126 - gmx:100784442 418.313