Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00400 atggCTTCTTCAATCACCAATACATTCACCTACGACGTTTTCCTAAGCTTCAGAGGCATCGATACTCGCTACACTTTCACCGGCTATCTCCATAAAGCACTCCACGACAAAGGAATCATCACCTTCATCGACGACAACCACCTTCAAAAAGGTGACGAAATCACACTCTCACTTCTCAAAGCTATCGAAAATTCCAGAATCGCAATCGTTGTGCTTTCTAAAAATTACGCATCTTCGTCGTTTTGCTTACAAGAACTATGTAAAATTCTTGATTGTGTGATTGAAAATGGGATTTTGGTTTGGCCGGTTTTTTATGATGTGGAGCCTTCGAGTGTGAGGAAGTTGAGTGGAAGTTTTGGAGAAGCATTGGCTGTACACGAGGTTAGGTATAGTGGTGAGATTGATAGGTTAGAGAAATGGAAGAAAGCTCTGAAACAAGTTGCTAATTTAGCTGGATTTCATTACAAAAAGGGGGATGGATATGAGCATGAGTTTATTGGGAAGATTGTGGAACAAGTCTCAAGAGAGATTAAACATGTTACTTTACCTGCTGTTGAATATAGAATTGGACTGGAGCCCCAAAGACAAAATGTACTTTCGCTTTTGAGTGTTGGGTGTGATGATAGAGTTGTCATGGTAGGGATCCATGGAATTGGTGGAATTGGTAAAACAACTCTTGCTCTAGAAGTCTATAATTCGATTGTCCATCAATTTGAAGGTTCATGTTTTGTTGAACATGTTCGGGAAAGTTCAGAGAAACATGGGTTGATATATCTCCAAAAAATCATTCTTTCTGAAATAgttggagagaaagaaattgagtTAACAAGTGTTAAACAAGGAATTTCAGTAATACAACAAAGGCTCCGACAAAAGAAGGTTCTTTTGCTTCTAGATGATGTTGATGAGGAGAAACAATTAAATGCTATTGCCGGAAGACATGATTGGTTTGGTCTCGGCAGTAGAGTCATAATCACAACTCGGGACAAAGGGTTGCTAACATCTCACAGGGTTGAAAGTATGTACGAGGTGCACGGGCTGAGCAAGAAAGATGCTTTTGAATTGCTTAgacaaaaatcttttaaaacCAACAAAGTTTGTCCAAGTTATGCGGATGTTTTAAATCGTGCCTTGACTTATGCTTCTGGCCTTCCATTGGCTTTAGAAGTAATAGGTTctcatttatttaataaaacaatAGATCAATGTAAATCTACATTAGACCGTTATGAAAGGATTCCTGATACAAAGATGCAAACAATACTAAAAGTGAGCTTTGATgttttggaagaagaagaaaaaagtgttTTTCTTGACATTGCTTGTTGCTTCAAAGGAAATGATTTGGCAATTGTAAATGAAATGCTTCACGCTCATCATGGTGACAACATGGAAGATCACATTCAGGTGTTAGTGAAAAAATCTCTCATAAAGATAACAGAGTCTCGTATGGTAACATTACATGATGTGGTAGAAGACATGGCCAAAGAAATAGTTAGACAAGAATCACTGAAAGAGCCTGGAAAGCGCAGTAGGTTATGGTGCCCTGAAGATATAGTTcaagttttagaagaaaatacGGGAACAAGTAAAATTGAAATCATATATTCGGATTCCTCTATTGAAGTAGAGTGGGATGAAGAGGCtttcaagaaaatgaaaaaccTCAGAACACTTATTATTAGGCATGGTGCTTTTTCTGAAAGTCCCAAATATCTTCCAAATAGTTTAAGAGTTCTGGAATGGTGGAAGTATCCTTCAGGAGGTGTACCATCTGATTTTTATCCCAAGAAACTTGCCATATGCAAATTTTCCTTTGACTTTACATCATTCGTATGGGGAGACTTCTTAAAAAAGGCAAGTTTCCAAAATATGAGGGTTTTAAATATAGATAGCTGTGAATTGTTAGCACAGATGCCTGACATATCCGGTCTCCTAAATTTAGAAGAACTTTCATTTCAATATTGTGAGAATTTGATTACAATTGATGATTCAGTTGGGTTGTTGGGTAAACTTAAAATCTTGAGAGTTGGCAGTTGCAAAAAGCTCAAGAGTTTTCCACCTCTCAAGTTGGTTTCGCTAGAAGAACTCGATCTTTCATATTGTGATAGTCTTGAGAGTTATCCACATGTGGTAGATGGATTGCTAAATAAACTCAAAATCTTGAGTGTTAAAAGTTGCAACGCTATTAGGAGTATTCCACCTCTTAAGCTGGATTCACTTGAAGAACTTTATCTTTTATCTTGTGAAAGTCTGGAGTGTTTTCCACACGTGGTGGATGGGTTGCTGGAGAAACTTAAAATATTGAGAGTTATAAGTTGCAGTAATATGAGGAGTATCCCACCTCTCAAGTTGGTTTCACTAGAAGAACTCAATCTTTCATTTTGTGATAGTCTCGAGAGTTTTCCACCCATTGTGGATGGGTTGTTAGGTAAACTTAAATTCCTAAGTGTTAGATATTGCTGCAAACTCAACAATATTCCAGCTCTCAAGTTGGATTCTTTGGAACAACTCGATCTTTCATTTTGTGATAGACTTCAGAGTTTTCCACCCGTGGTAGATGGGTTGCTGGAGAAACTTCAAATCTTCAAAGTCAATTGTTGCAACCATATTAGGAGTATCCCACCTCTCAAGTTAGATTCGCTAAAGGAACTCCACTTTTCTTATTGTGATTCTCTTGAGAATTTTCCACCTGTGGTGGATGGGTTGCTAGATAAACTTAAATTCTTGAGTATTGAAAGTTGCAACAATATGAAGAGAATTCCACCTCTCAGATTGGCTTCTCTAGAAGAACTTGATCTTTCAAATTGTTGGAGTCTTGAGAGTTTTCCACTTGTGAGTTTGCCACCCATGGATGGGTCACTCGAGAAACTTAAATTCCTGAGTATTAGATACTGCCGCAAGCTTAGGAGTATTCCACCTCTCAAGTTGGATTCGTTGGAACTACTCAATATATCACATTGTGAGAGTCTTGATAGTTTTCCACCTGTGGTGGATGGGCTGTTGGAAAAGCTTAAAATCATGAGAGTTATAAGTTGCAAAAATCTCAAGAGTATACCACCTCTAAAGTTGACTTTGTTGGAAGAACTTGATCTTAGTTATTGTGATAGTCTCGAGAGTTTTCCAACCGTGGTGGATGGATTGTTGGGTAAACTTAAATTTTTGAGCATTAAAGGTTGCAACAGCCTCAAAAGTATTTCACCTCTCAAGTTAGCTTCTTTAGAAAAACTTGATCTTTCAAATTGTGATAATCTCGAGAGTTTTTCGCCTGCGGTGGATGGGTTTATGGATAAACTTAAATTCTTGAGTGTTATGTATTGCCGCAAGCTCAGGAGCATTCCACCTCTCAAGTTGGCTTTCCTAGAACAACTTGATCTTTTACATTGTGATAGTCTTGAGAATTTTCCACTTGTGGTGGATGGATTGCTAGAGAAACTTAGAATCTTGAGACTAAGTTGTAACTGTATCCAGAGTATCCCTCCTCTCAAGTTTGCTTCCCTGGAAGAACTTAATATTTCATATTGTGATAATCTCGAGAGTTTTCCACACTTGATAGATGGGTTTCTGGGTAAGCTTAAGTTCTTTAATGTTAGATATTGCTACAAGCTCAAAAGTATACCACCTCTCAAATTGGATTTGCTGGAACAACTCAGTTTTTCATATTGTAATAGTCTAGAGAGTTTTCCACCCATCGTGGATGGGCAGCTGAGGAAACTTAAAATCTTGAGAGTTACAAATTCTAGCAATATCAAGAGTATCCCGCCTCTCAAGTTGGCTTCCTTAGAAGAACTCAATCTTTCATATTGTGATAATCTTGAGAGTTTTCCAGATTTTGTGGATGGGTTTCCGAGTAATCTCAAAGTGCTCAGTGTTAGATATTGCCGCAAGCTCAAAAGTATTCCACCTCTCAAGTTTGCTTTGCTGGATGTTCTTGATCTTTCATATTGTGATAGTCTTGAGAGTTTTCCACACATATTATGCAAGATGGAAAATATACGAGAGGTTTACTGGTATACAACTCCCATAAATGAATTGCCATTTTGTTTTCATAATCTTACCCAACTTCAAACTGTCAATAGGTTTAATTTACCAAGTAGCATTGTCATGATGCTAGAACTGGCTGAGCTTATCATTGAGGACGGTGGGTGGCTATTCCCAAAAGAAGACCAAGGTGAAGAACAAGTGATATCAATGAAGTCTTCACAACTAGAATTTCTTCGTCTCTGGAACTGTAATCTTTCTGATGAATCTTTGGCAATAGGTCTCAGGTGGTTTGCTAATGTTAAAGAATTATACCTAAATGGGAGTAATTTCACCATTCTCCCCGAATGCATCGAAAAATGTCACTTTTTATGGAAGCTTGTCTTGGATAATTGTGAGAATCTTCTGGAAATCAAGGGTATTCCGCCAAGCTTAAAAACTTTTTCTGCCATGAACTGCATATCTTTGACTACTTCATGCACAAGCAAGTTTCTGAATCAGGAACTCCATGAGTCTGGAAACACGAGTTTTGTTTTTCCAGAAGAAGAGATTCCAAAGTGGATTGACCACCAATGCATGAAAGGATTGCCTATTTCATTTTGGTTTCGTAACAAGTTCCCTGCCATAGTTCTATGTGTTGTTTCTCCATTGACAAGGGATAAGTCTCATTATGACGTGAATATGATCATAAATGGCAAAACCATTTTTTATAGGGATGATGAGGATGAATATGAGTGTCCGATATCATTTCATTTACATCTTTTTCATATACAAATTgaaaaatttgatgatgatgtgGACGGAGCACTTTTAGAAAATGAGTGGAACCATGTGGTGGTTGACTTCATATTTGAATTCCAGAATAGTGGGATCCATGTGTTGAAAGAGAAATGTAGCATGATGGATATCCGATTCACCAATCCAGAGAATGATGTTAATATGGGGGTTACTCTTTATAACTGA 4944 0.3675 MASSITNTFTYDVFLSFRGIDTRYTFTGYLHKALHDKGIITFIDDNHLQKGDEITLSLLKAIENSRIAIVVLSKNYASSSFCLQELCKILDCVIENGILVWPVFYDVEPSSVRKLSGSFGEALAVHEVRYSGEIDRLEKWKKALKQVANLAGFHYKKGDGYEHEFIGKIVEQVSREIKHVTLPAVEYRIGLEPQRQNVLSLLSVGCDDRVVMVGIHGIGGIGKTTLALEVYNSIVHQFEGSCFVEHVRESSEKHGLIYLQKIILSEIVGEKEIELTSVKQGISVIQQRLRQKKVLLLLDDVDEEKQLNAIAGRHDWFGLGSRVIITTRDKGLLTSHRVESMYEVHGLSKKDAFELLRQKSFKTNKVCPSYADVLNRALTYASGLPLALEVIGSHLFNKTIDQCKSTLDRYERIPDTKMQTILKVSFDVLEEEEKSVFLDIACCFKGNDLAIVNEMLHAHHGDNMEDHIQVLVKKSLIKITESRMVTLHDVVEDMAKEIVRQESLKEPGKRSRLWCPEDIVQVLEENTGTSKIEIIYSDSSIEVEWDEEAFKKMKNLRTLIIRHGAFSESPKYLPNSLRVLEWWKYPSGGVPSDFYPKKLAICKFSFDFTSFVWGDFLKKASFQNMRVLNIDSCELLAQMPDISGLLNLEELSFQYCENLITIDDSVGLLGKLKILRVGSCKKLKSFPPLKLVSLEELDLSYCDSLESYPHVVDGLLNKLKILSVKSCNAIRSIPPLKLDSLEELYLLSCESLECFPHVVDGLLEKLKILRVISCSNMRSIPPLKLVSLEELNLSFCDSLESFPPIVDGLLGKLKFLSVRYCCKLNNIPALKLDSLEQLDLSFCDRLQSFPPVVDGLLEKLQIFKVNCCNHIRSIPPLKLDSLKELHFSYCDSLENFPPVVDGLLDKLKFLSIESCNNMKRIPPLRLASLEELDLSNCWSLESFPLVSLPPMDGSLEKLKFLSIRYCRKLRSIPPLKLDSLELLNISHCESLDSFPPVVDGLLEKLKIMRVISCKNLKSIPPLKLTLLEELDLSYCDSLESFPTVVDGLLGKLKFLSIKGCNSLKSISPLKLASLEKLDLSNCDNLESFSPAVDGFMDKLKFLSVMYCRKLRSIPPLKLAFLEQLDLLHCDSLENFPLVVDGLLEKLRILRLSCNCIQSIPPLKFASLEELNISYCDNLESFPHLIDGFLGKLKFFNVRYCYKLKSIPPLKLDLLEQLSFSYCNSLESFPPIVDGQLRKLKILRVTNSSNIKSIPPLKLASLEELNLSYCDNLESFPDFVDGFPSNLKVLSVRYCRKLKSIPPLKFALLDVLDLSYCDSLESFPHILCKMENIREVYWYTTPINELPFCFHNLTQLQTVNRFNLPSSIVMMLELAELIIEDGGWLFPKEDQGEEQVISMKSSQLEFLRLWNCNLSDESLAIGLRWFANVKELYLNGSNFTILPECIEKCHFLWKLVLDNCENLLEIKGIPPSLKTFSAMNCISLTTSCTSKFLNQELHESGNTSFVFPEEEIPKWIDHQCMKGLPISFWFRNKFPAIVLCVVSPLTRDKSHYDVNMIINGKTIFYRDDEDEYECPISFHLHLFHIQIEKFDDDVDGALLENEWNHVVVDFIFEFQNSGIHVLKEKCSMMDIRFTNPENDVNMGVTLYN 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00400 1647 Gene3D Ribonuclease Inhibitor 1232 1331 IPR032675 -
Tsu01g00400 1647 Gene3D Ribonuclease Inhibitor 946 1047 IPR032675 -
Tsu01g00400 1647 Gene3D Ribonuclease Inhibitor 810 945 IPR032675 -
Tsu01g00400 1647 Gene3D Ribonuclease Inhibitor 1385 1502 IPR032675 -
Tsu01g00400 1647 Pfam TIR domain 11 179 IPR000157 GO:0007165
Tsu01g00400 1647 PRINTS Disease resistance protein signature 381 395 - -
Tsu01g00400 1647 PRINTS Disease resistance protein signature 212 227 - -
Tsu01g00400 1647 PRINTS Disease resistance protein signature 288 302 - -
Tsu01g00400 1647 PRINTS Disease resistance protein signature 924 940 - -
Tsu01g00400 1647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 440 IPR027417 -
Tsu01g00400 1647 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 153 IPR035897 -
Tsu01g00400 1647 ProSiteProfiles TIR domain profile. 9 177 IPR000157 GO:0007165
Tsu01g00400 1647 SUPERFAMILY L domain-like 1136 1490 - -
Tsu01g00400 1647 Gene3D - 8 173 IPR035897 -
Tsu01g00400 1647 PANTHER ARCHAEAL ATPASE 21 1077 - -
Tsu01g00400 1647 Pfam NB-ARC domain 197 406 IPR002182 GO:0043531
Tsu01g00400 1647 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1143 1610 IPR044974 GO:0006952
Tsu01g00400 1647 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 1077 IPR044974 GO:0006952
Tsu01g00400 1647 SUPERFAMILY "Winged helix" DNA-binding domain 417 524 IPR036390 -
Tsu01g00400 1647 Gene3D Ribonuclease Inhibitor 1048 1231 IPR032675 -
Tsu01g00400 1647 SMART till_3 10 150 IPR000157 GO:0007165
Tsu01g00400 1647 Gene3D - 346 430 IPR042197 -
Tsu01g00400 1647 ProSiteProfiles Leucine-rich repeat profile. 1145 1166 IPR001611 GO:0005515
Tsu01g00400 1647 SUPERFAMILY L domain-like 537 868 - -
Tsu01g00400 1647 PANTHER ARCHAEAL ATPASE 1143 1610 - -
Tsu01g00400 1647 SUPERFAMILY L domain-like 856 1137 - -
Tsu01g00400 1647 Gene3D - 174 341 IPR027417 -
Tsu01g00400 1647 Gene3D Ribonuclease Inhibitor 454 809 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00400 Tsu-Chr1 3335719 3347612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00400 763 944 WRKY Transcription Factor Family AT4G12020 33.333 4.73e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00400 - - mtr:MTR_1g019550 2519.96