Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00357 atgGCTTGTGAGAGTAAGGGAAAGCTAAATGTGAGAAAACCTCAGTTCTATCAGGTCTTTTCCCCTTCTTCCACCTCTCAATCTCTGAGGATTCCAGATGGCTTTGTCCATCAAATGGAGGGCACCACTTGCGGATTAGTTTCATTAACTGGTCCTAGTGGAAATAATTGGCAAGTTCGATTAGTTGAGCAGGACAATTGTCTATTCTTTCATCATGGATGGTCAACATTTGTGGGAGATCATCATTTAGAATATGGCGACCTTTTGGTTTTCCGATACGAGGGTCACCTGCATTTCACTGTGCAAGTATTTGGTGAGAATGCATGTGAGAAAGAAGCAGCATTTCATACTGAATGCAATCTAAATTCAATCAACTTCGATAATATTAAAGGACAGAAAAGTGACGCTAAGGAGACTTCTTCTTTGGATGTTGTTAGTGGTCAGCAGGGTATTGCCGGTAGAGATCTATCCAAGTATGAGGTAGTTAAGCCAATTAGTATGATCAGAGAAACAGAAGAAACCTACAAAGAATTTTCAGCTAGTGCTGTCCCTGTTCCTTTACACACAGGAAATAGTAATGAAGATCAAGCTTCGCTGTCAACGCTATCAGCACATGATGAAAAAAAGATAGCTCAGTCATTTACCTCCTCTTTTccatattttgttaaaataattaaaacctTCAATGTCAGTGGTTCATATACTCTGAATATACCATATCAATTTTCAACAGCACATCTTCCAAACTGCAAGATACAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTTCCAACAACTAGAGTGCATACAAGTCACACTCTATGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACATCAGTATGAATTACGTGTTCGCATCGCTGAGGTTGGAAAAGATGGGCTAGACTCCCAGGTTGGAAAGCTAGCTTTTAGTATGGTTACTGCAAGACATGATGTCGCTTGCCACAAGACTTCCAGATATATGCCAAAGAGTCCTAAAGTCAGCTCAAAGTGCAGAAACAAAGTTGATCAATCAGATAAGAAGTCGTCAAAGATTGGTCAAGACACTGTTTTATCCATTGACTTAAAGAAATCCGGTAGAGCTTCAAATACTTCAAAGAAGATGGGGCTTAGCCCCAAGTCGAAAGCTGTCCATAAAAAGCCGGCTGTACCGAGGAAACATCGGGTTGAAGATGAATTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGACGAGCAAAGAGTAGCTGAAGCTTTTAGTTCCCCGTTTCCTAATTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATATCAGTTCTCTGCTGCACATCTCCCCGCCTACAAAACAGAAGTTACACTTCGCAATTCAAGAGGCGATTGTTGGACTGTGAACTCCGTCCCAGATGCTAAAGGGAGAACAATTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGTGACACATGCATTTTTGAGCTGGTTTCTCATTATGTGATGCACGTTTATATATCTGGGGTTGGAAAGGAAGGTCTTGACAATCAACATGGGCATGTGAAACTTATAGCTAACTAG 1689 0.402 MACESKGKLNVRKPQFYQVFSPSSTSQSLRIPDGFVHQMEGTTCGLVSLTGPSGNNWQVRLVEQDNCLFFHHGWSTFVGDHHLEYGDLLVFRYEGHLHFTVQVFGENACEKEAAFHTECNLNSINFDNIKGQKSDAKETSSLDVVSGQQGIAGRDLSKYEVVKPISMIRETEETYKEFSASAVPVPLHTGNSNEDQASLSTLSAHDEKKIAQSFTSSFPYFVKIIKTFNVSGSYTLNIPYQFSTAHLPNCKIQIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFELIHQYELRVRIAEVGKDGLDSQVGKLAFSMVTARHDVACHKTSRYMPKSPKVSSKCRNKVDQSDKKSSKIGQDTVLSIDLKKSGRASNTSKKMGLSPKSKAVHKKPAVPRKHRVEDELSSQAKAGLRMLFALDEQRVAEAFSSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVTLRNSRGDCWTVNSVPDAKGRTIHTFCGGWMAFVRDNDINFGDTCIFELVSHYVMHVYISGVGKEGLDNQHGHVKLIAN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00357 562 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 425 557 - -
Tsu01g00357 562 ProSiteProfiles B3 DNA-binding domain profile. 450 546 IPR003340 GO:0003677
Tsu01g00357 562 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 424 - -
Tsu01g00357 562 MobiDBLite consensus disorder prediction 383 397 - -
Tsu01g00357 562 ProSiteProfiles B3 DNA-binding domain profile. 221 317 IPR003340 GO:0003677
Tsu01g00357 562 SMART B3_2 450 546 IPR003340 GO:0003677
Tsu01g00357 562 SMART B3_2 221 317 IPR003340 GO:0003677
Tsu01g00357 562 SMART B3_2 16 107 IPR003340 GO:0003677
Tsu01g00357 562 CDD B3_DNA 14 104 IPR003340 GO:0003677
Tsu01g00357 562 PANTHER B3 DOMAIN-CONTAINING 425 557 - -
Tsu01g00357 562 PANTHER B3 DOMAIN-CONTAINING 1 424 - -
Tsu01g00357 562 MobiDBLite consensus disorder prediction 347 371 - -
Tsu01g00357 562 Pfam B3 DNA binding domain 221 312 IPR003340 GO:0003677
Tsu01g00357 562 Pfam B3 DNA binding domain 19 104 IPR003340 GO:0003677
Tsu01g00357 562 Pfam B3 DNA binding domain 450 535 IPR003340 GO:0003677
Tsu01g00357 562 MobiDBLite consensus disorder prediction 356 370 - -
Tsu01g00357 562 Gene3D - 8 109 IPR015300 -
Tsu01g00357 562 CDD B3_DNA 448 541 IPR003340 GO:0003677
Tsu01g00357 562 SUPERFAMILY DNA-binding pseudobarrel domain 443 544 IPR015300 -
Tsu01g00357 562 MobiDBLite consensus disorder prediction 383 418 - -
Tsu01g00357 562 CDD B3_DNA 219 313 IPR003340 GO:0003677
Tsu01g00357 562 SUPERFAMILY DNA-binding pseudobarrel domain 214 314 IPR015300 -
Tsu01g00357 562 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Tsu01g00357 562 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Tsu01g00357 562 Gene3D - 203 316 IPR015300 -
Tsu01g00357 562 Gene3D - 435 545 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00357 Tsu-Chr1 3007592 3011505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00357 13 327 B3 DNA Binding Superfamily AT3G18990 24.217 1.29e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g00357 B3 7.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00357 - - gmx:100814386 847.425