Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00356 ATGGTTGGAGTTGGTGGAAGCAAATCATGGCAGGAAGATATTTACTGGACCCATTTTCAGTTCATCCATTTCACTCAATTTCTCAAAACTCattttcaacaacaacttGCACTTCccaaaacattttcaaacaatGTAAAGAAGAAGTTGCCAGAAAATGCGACCCTTAAAGGTCCCAGTGGAGTTGTGTGGAATATAGGGCTGCAAACTAAAGATGATATTGTTTACTTCACGAATGGCTGGCAACAATTCTTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTAGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTATGTGAGAAAGCAGCTTCTTATTTTGTCGGAAAATGTGGAACTGAACAAGGGGATAGCAAGGCAAAGGAAACAAACACTGCTACTGAAGAAGTCATTAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTCACCTGAGAAATTTCGGCGTCTTAACAGTATACGAACACCATTAGCTGTACCTTTTGAAACTACAAATGAAAAGACTTGTAATGCTGGTGTTGAATCTGCTCCCCCCAAGAAACGGATGGCTGATGCACTAACTAAGACCACAACTATACAGTTTCCCTTCCAACCAACCGGCAAAAGGACCAAGAAGCCTGTCAATGAAGTTACACCTGTCCAGACTAAGAAGCGAGGGAGACCATTCAAAGCAGCTCATTCTTGTGATTTGGTGGCTTGTAACAAGGAACACTCagAGGCATCTATCCTGAATAGAAGTGGCAAGGAAGATAACCATTATACTCCTAGCAGTGGAGCTTCACTTTCAAGGTCATCAGTATGTCATGAGAAAAAGATAGCCCAGTCATTTACCTCCACTTTTccatattttgttaaaataatgaaatcatTCAATGTCAGCGGTTCACGTATTCTGAATGTACCATCAAAATTTTCGAAAGCACATCTTCCAAACACCAAGATACAAATTATTCTTCATAATTTGAAGGGAGAACAGTGGACTGTTAATGCCGTTCCAACAACTAAATTGCAGACAAGTCACACTATGTGTGGAGGATGGTTGGATTTTGTTCGTGGCAATGGCATAAAGATTGGAGATGTCTGCATTTTCGAACTTATAGGTGAGTGTGAATTACGTGTTCGTATCGCTGAGGTTGGAAAAGATGGGCTAGAAGACTCCCAGGTTGGAAAACAAGCTTCTAGTATGCTTGGTGCAAGACATGATGTCGCTCGCCGTAAGACTTCCAGTTCGAGATATAAGCCAAAGAGTTCTAAATTCAGCTCAAAGTACAGAAAGAAAGTTGTTGCATCAGATAAAAAGTTGTCAAAGATTGGTCAAGAAGCTGTTTCATCCATTGAATTGAAGAAATCCGAGGTTGGAAAGGAAGGTCTTGATAATCAAAATGGGCTTGTGACCCTAAGTACCTAG 1458 0.3889 MVGVGGSKSWQEDIYWTHFQFIHFTQFLKTHFQQQLALPKTFSNNVKKKLPENATLKGPSGVVWNIGLQTKDDIVYFTNGWQQFLKDHSLKENDFLVFKYNGESHFEVLIFDGESLCEKAASYFVGKCGTEQGDSKAKETNTATEEVINTASNGGVECGSPEKFRRLNSIRTPLAVPFETTNEKTCNAGVESAPPKKRMADALTKTTTIQFPFQPTGKRTKKPVNEVTPVQTKKRGRPFKAAHSCDLVACNKEHSEASILNRSGKEDNHYTPSSGASLSRSSVCHEKKIAQSFTSTFPYFVKIMKSFNVSGSRILNVPSKFSKAHLPNTKIQIILHNLKGEQWTVNAVPTTKLQTSHTMCGGWLDFVRGNGIKIGDVCIFELIGECELRVRIAEVGKDGLEDSQVGKQASSMLGARHDVARRKTSSSRYKPKSSKFSSKYRKKVVASDKKLSKIGQEAVSSIELKKSEVGKEGLDNQNGLVTLST 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00356 485 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 7 407 - -
Tsu01g00356 485 SUPERFAMILY DNA-binding pseudobarrel domain 20 112 IPR015300 -
Tsu01g00356 485 ProSiteProfiles B3 DNA-binding domain profile. 300 396 IPR003340 GO:0003677
Tsu01g00356 485 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 7 407 IPR044837 -
Tsu01g00356 485 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Tsu01g00356 485 CDD B3_DNA 23 112 IPR003340 GO:0003677
Tsu01g00356 485 MobiDBLite consensus disorder prediction 213 235 - -
Tsu01g00356 485 Pfam B3 DNA binding domain 300 392 IPR003340 GO:0003677
Tsu01g00356 485 Pfam B3 DNA binding domain 31 112 IPR003340 GO:0003677
Tsu01g00356 485 SMART B3_2 24 114 IPR003340 GO:0003677
Tsu01g00356 485 SMART B3_2 300 396 IPR003340 GO:0003677
Tsu01g00356 485 MobiDBLite consensus disorder prediction 411 441 - -
Tsu01g00356 485 Gene3D - 18 117 IPR015300 -
Tsu01g00356 485 SUPERFAMILY DNA-binding pseudobarrel domain 293 393 IPR015300 -
Tsu01g00356 485 Gene3D - 283 396 IPR015300 -
Tsu01g00356 485 CDD B3_DNA 298 392 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00356 Tsu-Chr1 2999611 3004289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00356 10 129 REM Transcription Factor Family AT4G33280 56.198 3.44e-44 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g00356 B3 6.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00356 - - mtr:MTR_1g021320 584.334