Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00354 ATGGGAGGAGGAAGCAAATTATGGGAGGAAAACATTTACTGGACCCATTTTCAATTCATCCATTTCACACAATTTCTCCGCAATGATTTTCATCAACAACTTGCGCTTCcgaaaacattttcaaacaatGTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAAGGTAGGGCTGACTACTAGAGACGATACCTTGTACTTCACGAACGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAAGTGAATGATTTCCTTGTATTTAAGTATAAGGGTGAATCACACTTTGAGGTTTTAATCTTTGGTGGAAAAAGTTTATGTGAGAAAGCAGCTTCTTATTTTGTCGGAAAATGTAGTAATGTTAAAGCTGAACAAGGGGGTAGCAAGGCAAAGGACACAAACACTTGTGCTGAAGAAGTCATTAATCCTGCTTTGAATGGTGGTGTAGAAACGCCATTAGTTGTACCTTTTGAAACTACCAATGGAAAGACTTGTAATGCTGGTGTTGAATCTGCTTCCCCTGAGAAATTAATGGCTGATGCACTCACTAAGACCACAACTATGCAGTTTCCATTCCGACCAACTGGCAAAAGGACTGAGAAGCCTGTTAATGAAGTTACGCCTGTCCAGAAGAAGCGAGGAAGACCACCAAAAGCGGTTAATTCTTCTGAGAGAGCACATGATTTGGTGGCTTCTAACAAGGAACACTCGGCAACCATCCTAAATAGAAGTGGGAATGAAGACGAGGAGAAAAAGATAGCCCAATCATTTACCACCTCTTTTCCATATTTAGTTCGAATTCTCAAAACGGGCAATGTCATTGGTTCACGTACTCTGACAATCCCATATCAGTTCGCTGCTAAACATTTCCCTGCCAACAAAATAGAAGTTACGCTATGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCCATCCCATATGGTAAAAGAGGATTAACTCACAGCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACTTAAAAGTTGGCGATGCGTGCATTTTTGAGCTCGTTTCTCATAATGTGATGCAGGTCTATATATCTGGGGTTGGAAAGGAAGGGTTTGGTCAACAGAATGGACATGCTAAAGGATGA 1146 0.4075 MGGGSKLWEENIYWTHFQFIHFTQFLRNDFHQQLALPKTFSNNVKKKLPENVTLKGPSGVVWKVGLTTRDDTLYFTNGWQQFVKDHSLKVNDFLVFKYKGESHFEVLIFGGKSLCEKAASYFVGKCSNVKAEQGGSKAKDTNTCAEEVINPALNGGVETPLVVPFETTNGKTCNAGVESASPEKLMADALTKTTTMQFPFRPTGKRTEKPVNEVTPVQKKRGRPPKAVNSSERAHDLVASNKEHSATILNRSGNEDEEKKIAQSFTTSFPYLVRILKTGNVIGSRTLTIPYQFAAKHFPANKIEVTLCNSRGECWTVNSIPYGKRGLTHSFCGGWMAFVRDNDLKVGDACIFELVSHNVMQVYISGVGKEGFGQQNGHAKG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00354 381 Gene3D - 252 367 IPR015300 -
Tsu01g00354 381 MobiDBLite consensus disorder prediction 199 238 - -
Tsu01g00354 381 ProSiteProfiles B3 DNA-binding domain profile. 272 368 IPR003340 GO:0003677
Tsu01g00354 381 SUPERFAMILY DNA-binding pseudobarrel domain 18 110 IPR015300 -
Tsu01g00354 381 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 379 IPR044837 -
Tsu01g00354 381 Pfam B3 DNA binding domain 275 357 IPR003340 GO:0003677
Tsu01g00354 381 Pfam B3 DNA binding domain 30 108 IPR003340 GO:0003677
Tsu01g00354 381 SUPERFAMILY DNA-binding pseudobarrel domain 265 366 IPR015300 -
Tsu01g00354 381 CDD B3_DNA 21 109 IPR003340 GO:0003677
Tsu01g00354 381 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Tsu01g00354 381 Gene3D - 15 115 IPR015300 -
Tsu01g00354 381 SMART B3_2 272 368 IPR003340 GO:0003677
Tsu01g00354 381 SMART B3_2 22 112 IPR003340 GO:0003677
Tsu01g00354 381 MobiDBLite consensus disorder prediction 206 238 - -
Tsu01g00354 381 CDD B3_DNA 270 364 IPR003340 GO:0003677
Tsu01g00354 381 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 6 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00354 Tsu-Chr1 2965963 2969009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00354 8 353 REM Transcription Factor Family AT4G33280 32.425 2.09e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g00354 B3 2.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00354 - - mtr:MTR_1g021435 469.929