Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00353 ATGGGAGGAAGAGGACAAACCATTGGTAGCAGCAAATCATGGCAGGAAGAAATCTACTGGACCCATTTTCAGTTCATCCATTTCATTCAATTTCTCCGCAATGATTTTCACCAACAACTTGCACTTCCGAAAACATTTTCCAACAATGTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAGGGTCCTAGTGGAGTGCTGTGGAATATAGGATTGACGATTAGAGATGATACTGTTTACTTTGTGGACGGTTGGCAACGATTCGTGAAAGATCATTCTTTGAAAGAGAATGATTACCTTCTCTTGAAGTACAATGGTGAGTCGCTCTTTGAGGTTTTCATTTTTGATGGAGAAAGTAATTGTGAGAAGGCAGCTTCGTATTTCGTTGGAAAATGTGATAATGTTAAAGCTGAACAAGGAGGTACCAAGGTGAAGGATACAAACACTTCTGCTGAAGAAGTCATTACTGCTTCTGATGGCGGTGTTGAATGTGGTTCACCATCATCTGAGAAATTTCGGCGTCGTAACAATACTGGAACACCATTAGCTGTACCTTTTGAAACTACCAATGAAAAGACTTCAAATGCTGGTGCTAAATCTGATTCCCCTGAGCAGTTCTTGGCTGATGCAGTCACTAAGACCGCACCTGCTGCGCTTCCCGTGCAACGAACCAGCAGAAGGAGGGCTAAGAAGCCTGTTGAAATTGTGTCTGTCCCAGCTAAGAAGCGAGGCAGACCCTCCAAAGCAGCTAGTTCTGCTGAGCCAGTGCTTGATCTGGTGCCATTTAATATGGTGGCTTGTAGTAAGGACAAGGAACACTCagGGAGCAAAGGGAAAGATGTTGATGATCATAAAGAAGTGGAGGGTGGAAGCTGA 876 0.4338 MGGRGQTIGSSKSWQEEIYWTHFQFIHFIQFLRNDFHQQLALPKTFSNNVKKKLPENVTLKGPSGVLWNIGLTIRDDTVYFVDGWQRFVKDHSLKENDYLLLKYNGESLFEVFIFDGESNCEKAASYFVGKCDNVKAEQGGTKVKDTNTSAEEVITASDGGVECGSPSSEKFRRRNNTGTPLAVPFETTNEKTSNAGAKSDSPEQFLADAVTKTAPAALPVQRTSRRRAKKPVEIVSVPAKKRGRPSKAASSAEPVLDLVPFNMVACSKDKEHSGSKGKDVDDHKEVEGGS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00353 291 Gene3D - 21 121 IPR015300 -
Tsu01g00353 291 MobiDBLite consensus disorder prediction 171 201 - -
Tsu01g00353 291 CDD B3_DNA 27 116 IPR003340 GO:0003677
Tsu01g00353 291 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 189 IPR044837 -
Tsu01g00353 291 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Tsu01g00353 291 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 11 189 - -
Tsu01g00353 291 SMART B3_2 28 118 IPR003340 GO:0003677
Tsu01g00353 291 MobiDBLite consensus disorder prediction 269 291 - -
Tsu01g00353 291 SUPERFAMILY DNA-binding pseudobarrel domain 24 116 IPR015300 -
Tsu01g00353 291 MobiDBLite consensus disorder prediction 270 291 - -
Tsu01g00353 291 MobiDBLite consensus disorder prediction 159 202 - -
Tsu01g00353 291 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00353 Tsu-Chr1 2959312 2962378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00353 14 140 REM Transcription Factor Family AT4G33280 53.125 1.08e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g00353 B3 3.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00353 - - mtr:MTR_1g021320 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00353 01 2959312 2962378 Tsu01g00353 01 2959312 2962378 ECH