Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00352 ATGGGAGGTGGTGGGTGTAGATCTTGGGAGGAAGACATTTACTGGACCCATTTTCAATTCATCCATTTCACACAATTTCTTCGCAATGATTTTCATCAACAACTTGCACTCCctaaaacattttcaaacaatGTCAAAAAGAAGTTGCCAGAAAATGTGGTCCTAAAAGGTCCTAGTGGAGTTGTGTGGGATATAGAGCTGACAACTAGAGACGGTATCGTGTACTTCACGAACGGTTGGCAACAATTTGTGAAAGATCATTCTTTGAAAGAGAATGATTTCCTTGTATTTAAGTACAACGGCGAGTCATTGTTTGAGGTTTTAATATTTGATGGGGAGAGTTTCTGTGAGAAGGCGGCTTCTTATTTTGTTCGAAAATGTGGGCGTGCTGATGCCAATACCGAACAAGGGGGTGGATATTCTAGCAAGAAAAAGGACATAGATAATTCTGTTGAAGAAGTTAATACTCCTTCGGATGGTGTTGATGAAGGTGTTTCACCTGAAAAATCTTTACATCTAAACAGTATCCGAGTGCCATTTGCTGTACCTGTTGAAACTACCAACGGAAAGACTTCTAATGGTGTTGTTGAATCTGCCTCCCCTGAGCAATTCATAGCCGATGCGGTCACTGAGACTGAGCCTGCAGATGCTGCCACTCAAAAAACTGGTAAACGGACAAGGAAGCCTGTTTATACGTCTGCCCCGAGTAAGAAGAGAGGAAGACCTCCAGGAAGACCGCCCAAAACATCTAATCCTGATGAGAAAGCTCTTAATTGGGTGACTGATGCTGAACTTTCTCCTAAGGGTTCTCCTAAGGGTTCTCCAAAGGGTAGATCCGGGGCACAAGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAACTGAGATTGAAAATACTCTTCAGTTGGCCCAGGCTGCATGTACCGACGAATGCTTGCTTGTAACAATGCGGCCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCAAATAAGTGGATACTAAACCATCTTTCTCCATCATCTCAAGATGTGATATTACGCATGGGTAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAATATTTTGCCCTCGACAATAACCTTGAAGAGTTTGATGTGTGTGTGTTCAAACCTGCCGGTCATATGCATGAATTATTGATCTTAGAAATGAGCATTTTTAGAGTCGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTCCGGGAAAGAAGAGGGGAGTCAAGAGAACCCCGCCTGGTGCTACCCAAAAAGAACATGAGTCCATTGAAGGAAAGAAGAGGGGAGTGAAGAGAACACTGACCAATGGTGTCCAAACAGAACTCGAGTGCATTGAAGGTGCTTAA 1410 0.4241 MGGGGCRSWEEDIYWTHFQFIHFTQFLRNDFHQQLALPKTFSNNVKKKLPENVVLKGPSGVVWDIELTTRDGIVYFTNGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAASYFVRKCGRADANTEQGGGYSSKKKDIDNSVEEVNTPSDGVDEGVSPEKSLHLNSIRVPFAVPVETTNGKTSNGVVESASPEQFIADAVTETEPADAATQKTGKRTRKPVYTSAPSKKRGRPPGRPPKTSNPDEKALNWVTDAELSPKGSPKGSPKGRSGAQELYTSNRRPVTKTEIENTLQLAQAACTDECLLVTMRPSHVYKRFFVSFPNKWILNHLSPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCVFKPAGHMHELLILEMSIFRVVEEITPLTAVNSPGKKRGVKRTPPGATQKEHESIEGKKRGVKRTLTNGVQTELECIEGA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00352 469 ProSiteProfiles B3 DNA-binding domain profile. 313 411 IPR003340 GO:0003677
Tsu01g00352 469 SUPERFAMILY DNA-binding pseudobarrel domain 19 111 IPR015300 -
Tsu01g00352 469 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 281 419 IPR044837 -
Tsu01g00352 469 CDD B3_DNA 312 409 IPR003340 GO:0003677
Tsu01g00352 469 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Tsu01g00352 469 Pfam B3 DNA binding domain 31 111 IPR003340 GO:0003677
Tsu01g00352 469 Pfam B3 DNA binding domain 315 397 IPR003340 GO:0003677
Tsu01g00352 469 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 281 419 - -
Tsu01g00352 469 Gene3D - 16 116 IPR015300 -
Tsu01g00352 469 CDD B3_DNA 22 111 IPR003340 GO:0003677
Tsu01g00352 469 Gene3D - 292 413 IPR015300 -
Tsu01g00352 469 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 186 - -
Tsu01g00352 469 MobiDBLite consensus disorder prediction 421 450 - -
Tsu01g00352 469 MobiDBLite consensus disorder prediction 133 168 - -
Tsu01g00352 469 SMART B3_2 313 406 IPR003340 GO:0003677
Tsu01g00352 469 SMART B3_2 23 113 IPR003340 GO:0003677
Tsu01g00352 469 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 186 IPR044837 -
Tsu01g00352 469 MobiDBLite consensus disorder prediction 210 289 - -
Tsu01g00352 469 SUPERFAMILY DNA-binding pseudobarrel domain 313 399 IPR015300 -
Tsu01g00352 469 MobiDBLite consensus disorder prediction 433 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00352 Tsu-Chr1 2953157 2957234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00352 301 409 REM Transcription Factor Family AT4G33280 38.532 1.97e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g00352 B3 2.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00352 - - mtr:MTR_1g021500 664.07