Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00348 ATGGCTGGTTTGTTACATTCCTTAATTTATTCTCTCCTTATCCTAATCATTTTATCATCACAATTAGCCAATGCTGCAAACAACACACAAAACTTTCACTACTTCTGTAATTATAACAACAGAGGTAACTATAGTTACTATACAGTTAAAAGCACATACCACAAAAACCTTATAACACTTTTCTCCAATCTCACTTCCAACACAAAAATCAACAACTACGGTTTCTATAATTTCTCAAACAACCGATACACAAGCAGAGACCGAGTAAATGCACTCGGTCTTTGCAGAGGCGATGTTAGGCCAAACGAGTGTCTTAGTTGTCTCGAAAGTTCAAGCAAAAATCTCACACAGCTTTGTCCATACCAAAAAGAAGCTATTGGTTGGTACGAAGACGAAAAATGCATGTTACGTTATTCAGACCGTTCGATATCTGGCTCAGTAATGGAAACAAGACCTGTTTATTATGCAAATAGCACGGGGGATGCAACCGATTTGAATGAGTTCAATTCGATGGTTAGGAACTTGTTGTATAACTTGACAAGTAGAGCTTCATCGGGTGATTCTCATTTAAAATATGCCGCGGGGAGTGCGAGTGGCCCTAATGATCAAACTATATATGGTCTTGTGCAGTGTACTCCTGATTTGTTTGAGTCTCAATGCAGTGATTGTTTGGTTCAATCTATTGCGCGTATAGCAATTGATTGTTGTAAAGATAAGAAAGGTGGAAGAGTTATTAGGCCTAGTTGTAGTATGAGATTTGAAACCAATTTCCTCTTCTATGAATCTACAGCACCATCACCTCCTCCTCCATCCACTACCAATAACACTTCCTCACaagCtcaagaagaaaatgaagatgatgaaattgaaatttctgAGTCATTGCGATTCAACTTCGACACAATAAGAGATGCAACGAATGACTTTGTCGAATCTAATAAACTTGGACAAGGCGGATTTGGGATTGTTTACAAAGGTAGGCTCTCCACTGGACAAGAGATTGCTGTCAAAAGATTGTCAAAGGATTCAGATCAAGGCGATATAGAATTTAAGAATGAAGTGCTTTTAGTGGCTAAGCTTCAGCATCGAAGTTTAGTTCGGCTACTCGGTTTCTGTATAGAAGGAAGAGAAAGACTGCTTATCTATGAATTTGTTGCTAATAAGAGCCTTGATTACTTCATATTCGATCAAGCCAAGAGAGCAAACTTAAATTGGGAAATAAGGTATAAAATCATTGCAGGTACTGCTCGAGGAATTCTTTACCTTCATGAGGATTCTCGATTAACCATTATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCAAAGATAGCAGATTTTGGCATGGCTAGATTGTTTGATGTGGGCCAAACTCAGGAAAATACAAATAGAATTGTGGGAACCTACGGATACATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTTAGTTTTGGTGTATTGATTCTTGAGATTATAAGTGGCTACAAAAATAGTTGCATTCGCTTCGGGGAGAGTATAGAGTATCTGCTGAGCTTTGTATGGAGAAATTGGAGGGACGAGTCTCTAACAAATGTTATAGATCCCACATTAAACAATGATGACTCAGTGAATGAAATAGTGAGATGCATCCATATTGGGTTACTATGCGTTCAAGAAAACGCAGCTATCAGACCAAATATGGCTTCTGTTGTACTAATGCTTAATAGtcattctctcactctctcgAGACCTTTAGAACCTGCATTTTATGTAGACAGTGGAGCGGGAGACCTTCAAGATCACATGATGCAGTCTTGGGAGTATAGAGGTAACTATACAGCCAACACCATCTACCACACAAACCTTAACACCCTTTTATCCACTCTCACTTCCATCACAAAAATCAACAACTACGGTTTTTACAATATCTCAAACGGCGAAAACACAAACAAAGTAAACGCCATTGGTCTTTGCAGAGGCGATGTTAAACAAAATGAGTGTCTTAGTTGCCTTAAAAGTTCAATCAACAATCTCACACAGCTTTGTCCGAACCAAAAAGAAGCTATTGGTTGGTATGAAGACGAAAAATGCATGTTACGTTATTCTGACCAATTGATATTTAGGTTAATGGAAACAAGACCGGCATATTATGCAAATGATATGTTAAATGCAAGTGATTTGAATGACTTCAATGAAGTTGTCCGCGACTTGCTTGATAATTTGACTAACAAAGCTTCGTCTGGTGATTCTCGTTTGAAATATGCCGCGGATAGTTCCCGCGGCCCTAATGATCAAACTATATATGGTCTTGTTCAGTGTACTCCTGATTTGTCTGAGTCAGATTGTAATTCATGTTTGGTTCAATCTATTGCAAGAATACCAATTGATTGTTGTAAAGATAAGATTGGCGGAAGAGTTGTTCGGCCTAGTTGTAACATGAGATTCGAAACATCTTTCCGCTTCTATGATCCTACAACACcgcaaccaccaccaccatcatctACTCCTCCTCCTCCAGGAAAGAGCCACACTATCACTATCATTGCCATAACAGTACCAATTGGTTCTGTTATGGTGCTCATTTTAATCTGCCTCTATTTAAGAGTTAGGAAGCCAATCAAAAGGTTTAAAAGTAAGTTGAATGAAGTTCAAGAAGACTATGAAGATGACAAGATTGAAATTTCTGAGTCATTGCAATTCAACTTTGACACACTAAGAGAGGCAACAGATGACTTTTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGGACTGTTTACAGAGGTAGACTCCCCAATGGTCAAGAGATTGGTGTCAAAAGGTTGTCAAGGGATTCTGGCCAAGGAGATTTAGAATTTAAGAACGAAGTGCTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTCAGACTACTCGGTTTTTGTATAGAAGGAAGAGAAAGACTACTTGTATATGAATTTGTTCATAATAAGAGTCTTGATTACTTCATTTTTGATCAAGCTAAGAGAGCCGACTTAAATTGGGAAAGGCGCTATAAAATCATTTTAGGGATTGCTCGAGGAATTATTTACCTTCATGAGGATTCTCGACTACGCATTATCCATCGCGATCTTAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCAAAGATAGCAGATTTTGGCATGGCTAGACTATTTGATGTGGACCAAACTCAGGAAAATACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTATTCAGTTTTGGCGTATTGATTCTTGAGATTATAAGTGGCCACAAAAACAGTGGCATTCGTCGTGGGAGTACTACAGAGTATCTACTAAGCTTTGCATGGAGAAATTGGAAAGAAGGGACTCCAACAAATATCATAGATCCTACATTAAACAATGATTCAAGAAATGAAATAATGAGATGTATCCATATTGGATTGCTATGTGTTCAAGAGAATATAACTAGTAGACCAACCATGGCTTCTGTTGTAGTGATGCTTAATAGTCATTCTGTCACTCTTCCAATACCTTTGGAACCTGCATTTCATATGGATAGTGGAAACTTTCAAGATATAAAATCATGGGGTCATAGTTCAGCTCAAGAATCAGTCAATGAGGCTTCAAATACAGAGCTATATCCTCGCTAG 3711 0.374 MAGLLHSLIYSLLILIILSSQLANAANNTQNFHYFCNYNNRGNYSYYTVKSTYHKNLITLFSNLTSNTKINNYGFYNFSNNRYTSRDRVNALGLCRGDVRPNECLSCLESSSKNLTQLCPYQKEAIGWYEDEKCMLRYSDRSISGSVMETRPVYYANSTGDATDLNEFNSMVRNLLYNLTSRASSGDSHLKYAAGSASGPNDQTIYGLVQCTPDLFESQCSDCLVQSIARIAIDCCKDKKGGRVIRPSCSMRFETNFLFYESTAPSPPPPSTTNNTSSQAQEENEDDEIEISESLRFNFDTIRDATNDFVESNKLGQGGFGIVYKGRLSTGQEIAVKRLSKDSDQGDIEFKNEVLLVAKLQHRSLVRLLGFCIEGRERLLIYEFVANKSLDYFIFDQAKRANLNWEIRYKIIAGTARGILYLHEDSRLTIIHRDLKASNILLDEEMNPKIADFGMARLFDVGQTQENTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGYKNSCIRFGESIEYLLSFVWRNWRDESLTNVIDPTLNNDDSVNEIVRCIHIGLLCVQENAAIRPNMASVVLMLNSHSLTLSRPLEPAFYVDSGAGDLQDHMMQSWEYRGNYTANTIYHTNLNTLLSTLTSITKINNYGFYNISNGENTNKVNAIGLCRGDVKQNECLSCLKSSINNLTQLCPNQKEAIGWYEDEKCMLRYSDQLIFRLMETRPAYYANDMLNASDLNDFNEVVRDLLDNLTNKASSGDSRLKYAADSSRGPNDQTIYGLVQCTPDLSESDCNSCLVQSIARIPIDCCKDKIGGRVVRPSCNMRFETSFRFYDPTTPQPPPPSSTPPPPGKSHTITIIAITVPIGSVMVLILICLYLRVRKPIKRFKSKLNEVQEDYEDDKIEISESLQFNFDTLREATDDFSDSNKLGQGGFGTVYRGRLPNGQEIGVKRLSRDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCIEGRERLLVYEFVHNKSLDYFIFDQAKRADLNWERRYKIILGIARGIIYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFDVDQTQENTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGHKNSGIRRGSTTEYLLSFAWRNWKEGTPTNIIDPTLNNDSRNEIMRCIHIGLLCVQENITSRPTMASVVVMLNSHSVTLPIPLEPAFHMDSGNFQDIKSWGHSSAQESVNEASNTELYPR 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00348 1236 Gene3D Phosphorylase Kinase; domain 1 880 993 - -
Tsu01g00348 1236 Gene3D Phosphorylase Kinase; domain 1 271 384 - -
Tsu01g00348 1236 CDD STKc_IRAK 924 1189 - -
Tsu01g00348 1236 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Tsu01g00348 1236 ProSiteProfiles Gnk2-homologous domain profile. 150 258 IPR002902 -
Tsu01g00348 1236 SUPERFAMILY Protein kinase-like (PK-like) 293 598 IPR011009 -
Tsu01g00348 1236 ProSiteProfiles Gnk2-homologous domain profile. 606 712 IPR002902 -
Tsu01g00348 1236 MobiDBLite consensus disorder prediction 260 287 - -
Tsu01g00348 1236 ProSiteProfiles Protein kinase domain profile. 309 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00348 1236 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 272 - -
Tsu01g00348 1236 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 278 607 - -
Tsu01g00348 1236 MobiDBLite consensus disorder prediction 830 845 - -
Tsu01g00348 1236 ProSiteProfiles Gnk2-homologous domain profile. 35 143 IPR002902 -
Tsu01g00348 1236 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 612 1227 - -
Tsu01g00348 1236 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 11 272 - -
Tsu01g00348 1236 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 278 607 - -
Tsu01g00348 1236 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 612 1227 - -
Tsu01g00348 1236 Pfam Protein tyrosine and serine/threonine kinase 921 1186 IPR001245 GO:0004672|GO:0006468
Tsu01g00348 1236 Pfam Protein tyrosine and serine/threonine kinase 312 577 IPR001245 GO:0004672|GO:0006468
Tsu01g00348 1236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Tsu01g00348 1236 Pfam Salt stress response/antifungal 616 709 IPR002902 -
Tsu01g00348 1236 Pfam Salt stress response/antifungal 36 140 IPR002902 -
Tsu01g00348 1236 Pfam Salt stress response/antifungal 732 823 IPR002902 -
Tsu01g00348 1236 Pfam Salt stress response/antifungal 161 255 IPR002902 -
Tsu01g00348 1236 Gene3D Transferase(Phosphotransferase) domain 1 994 1195 - -
Tsu01g00348 1236 Gene3D Transferase(Phosphotransferase) domain 1 385 589 - -
Tsu01g00348 1236 Coils Coil 879 899 - -
Tsu01g00348 1236 Gene3D - 720 825 IPR038408 -
Tsu01g00348 1236 Gene3D - 605 711 IPR038408 -
Tsu01g00348 1236 Gene3D - 28 142 IPR038408 -
Tsu01g00348 1236 Gene3D - 150 257 IPR038408 -
Tsu01g00348 1236 MobiDBLite consensus disorder prediction 827 847 - -
Tsu01g00348 1236 SUPERFAMILY Protein kinase-like (PK-like) 903 1217 IPR011009 -
Tsu01g00348 1236 ProSiteProfiles Gnk2-homologous domain profile. 718 826 IPR002902 -
Tsu01g00348 1236 CDD STKc_IRAK 315 581 - -
Tsu01g00348 1236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1039 1051 IPR008271 GO:0004672|GO:0006468
Tsu01g00348 1236 SMART serkin_6 309 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00348 1236 SMART serkin_6 918 1194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00348 1236 ProSiteProfiles Protein kinase domain profile. 918 1194 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00348 Tsu-Chr1 2899999 2914957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00348 8 599 Receptor kinase-like Gene Family AT4G21410 47.641 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g00348 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00348 - - sspl:121775462 1178.31