Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00343 ATGAGAAGGGAACAATCTCAGTCGTCTTGCATGACAGATGCGGAGCCTGATATAATTAGTAGCTTACCAGGTCATATAATAGACCATATTCTCGCACATTTGCCGATTAAAGAAGCAGTGAGAACAAGTATTTTATCTACCAAATGGAGGTACAAATGGGCTACACTTCCAAATCTCGTGTTTGATAGCCAATGTATCTCCGAAACTTCTGAAGACCTTTTAGATATCAAGAGCAAGCTTTCGAGAATTATTGATCACGTGCTTTTACTCCATTCTGGGCCAATCAAAAAGTTCAAGCTCTCCCATCGTGAGCTCATTGGTGTCACTGATATTGATCGGTGGACTCTTCATCTAACTAGAAGGCCTGTTAAAGAGTTTGTGCTGGAAATCTGGAAAGGGCAACGCTATAAGATACCTACATGCTTATTTTCTTGTCAAGGTTTACATCATTTGGAATTATTTAACTGCTGGCTTAAACCACCGTCAACATTTCAAGGCTTCAGAAACTTGAAGAGTCTTGATTTGCAACATGTTACATTGGCTCAAGATGCTTTTGAAAACTTGATATCCAGTTGTCCTCTGCTTGAACGATTGACGTTGATGAACTTCGATGGTTTCAACCATCTTAACATTCGTGCCCCAAATCTGCAGTTCTTTGACATTGGGGGTAAGTTTGACGATATTAGCTTTGAGAACACTTCTCATTTAGCTGTGGTATCCATTGGTCTGTATGTAAACTTCGAATTCAATCAAAGTAGATTGCATGGACGCTCTAGCAATTTGGTCGAATTTTTAATTCATCTACCCCGTATACAGAGGCTGGAGATCCAAAGCTATTTTTTGAAGTATTTAGCTATGGGCGTAGTGCCAGTAAAGCTTCCTACACCTTGCATTGATCTAAGTTATCTTTCCATACGCATAAACTTCAATGATTCAAAGGAAATCTCAGCTGCTCTTTGCTTGCTGAGGAACTCACCTAATTTACGAGAATTAGAAATATTGGCACGGCCTGAGGAGCAGCCTGTTCCATTTGTACACCATGCATATTGTTGGGAAGATGTCTATTTGGATTCTCCAGTCATGCGAGTGCAACATGTGAGAATAGATGGCATTTTTGGTATCAAACCTGAATTAGACTTTGTCAACTTTCTACTTCAATATTCTCCTGTGCTAGAAAAGATGGCTGTGAAACCTGCTTTAAACGCCGGACCAGAGTTGGTGAAAGATCTATTGCAGTTTAGGAGATCCTCAGCACGGGCTGAAGTTACTTACCTGGActaa 1281 0.402 MRREQSQSSCMTDAEPDIISSLPGHIIDHILAHLPIKEAVRTSILSTKWRYKWATLPNLVFDSQCISETSEDLLDIKSKLSRIIDHVLLLHSGPIKKFKLSHRELIGVTDIDRWTLHLTRRPVKEFVLEIWKGQRYKIPTCLFSCQGLHHLELFNCWLKPPSTFQGFRNLKSLDLQHVTLAQDAFENLISSCPLLERLTLMNFDGFNHLNIRAPNLQFFDIGGKFDDISFENTSHLAVVSIGLYVNFEFNQSRLHGRSSNLVEFLIHLPRIQRLEIQSYFLKYLAMGVVPVKLPTPCIDLSYLSIRINFNDSKEISAALCLLRNSPNLRELEILARPEEQPVPFVHHAYCWEDVYLDSPVMRVQHVRIDGIFGIKPELDFVNFLLQYSPVLEKMAVKPALNAGPELVKDLLQFRRSSARAEVTYLD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00343 426 ProSiteProfiles F-box domain profile. 16 50 IPR001810 GO:0005515
Tsu01g00343 426 SUPERFAMILY RNI-like 137 333 - -
Tsu01g00343 426 PANTHER F-BOX PROTEIN-LIKE 13 394 - -
Tsu01g00343 426 Pfam F-box domain 19 51 IPR001810 GO:0005515
Tsu01g00343 426 SUPERFAMILY F-box domain 16 75 IPR036047 GO:0005515
Tsu01g00343 426 Gene3D Ribonuclease Inhibitor 115 342 IPR032675 -
Tsu01g00343 426 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Tsu01g00343 426 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 13 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00343 Tsu-Chr1 2810774 2814061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00343 5 217 EF-hand Containing Proteins AT5G41840 24.303 3.69e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00343 - - gmx:100782183 685.641