Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00340 ATGAATCAAGTTGTGTTTAACTTCATTTTCTTCACACTAAGCattcttttttcatcaaaaaccAAGGCACAACAGAATTACTCAGGAAATTCAATACTCAGTTGCAAGAACAACGATGATACGGGACCTTCACCGGCATTTCTTTACACCTGCAATGGCCTCAACAGATCATGCTTGACCTTTCTCACCTTCAAATCCAATCCTCCTTATAATTCCGTTACCACAATTTCCAACCTCACATCATCGAACCCGGATGAGCTAGCCAGAATCAACCGTGCCACTTTGGCAACAGTTTTCCCACCTGGTAAAGAGGTTATTGTTCCTGTCAACTGTTCTTGTTTAACCAAGGACTATTACCAAGCTGAAACCAAATATATATTGGGTCTAAACCCAACATATTTCATAGTAGCAAACGACACGTTCCAGGGTTTGTCCACATGTGATTCTCTTATGCGTGCGAATCCATACGGGGAACTTGATTTGCATATAGGAATAGAGTTACATGTGCCACTCCGATGCGCTTGTCCAACGTATCATCAGAAAAAAAATGGTACCAAGTATTTACTCACATATTCTGTGAACTGGGGTGATAACATTTCAAATATTgctaaaaaattcaatatagcAGTAGGTAATCTACTTGATGCCAATGGTTTTTCCGCAGAAACTCAACTTTATCCATTCACAACTGTTCTCATTCCTTTGGCAAGTGAACCAGTGAGTTTAACAACCATTGTTGCTAATGatcctccaccaccaccaacaccaccaccaccaacctCTCTTGGTTGCAGCTTCAAAAAGTGCAAATCAAACAGGAAAGTACTCCTCATTGCTTTAACCACCTCAGTGCTGGTTCTTTGTGTCTTCTTGTTTGTGCTGTTTATGTTTCTGTTTCTGCTCAGAAAGAGATCGGCAAGGTTTCTTAAGCGAGGAacacaatttaacaataaaaaggGGGTGTTTTCTGAAGAGATTCGTGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGCTTTGAGGAAATAAAAGAGGCGACTGAGAATTTTAGTCCAAAGAACATAATCGAAGGTTCTTTATTTCGTGGTGTATTTGACAATGGCAAAGAAGTGTTGGCCGTTAAAAGAATGAGAAGAGATGCTTCCACAGAAATCAATTTGCTGAAAAGGATCAATCATTTCAACCTGATAAAACTGCAAGGTTACTGTGAAAACAATGATTGCATATATCTTGTTTATGAATACATAGAAAATGGATCTTTAAGAGAATGGCTTAGCAAGAATAGGTGCATTGAACACCAAAGTTGGGAAAAGAGGATACAGATTGCTTTGGATATTGCCAATGGACTTCAGTATCTTCACAACTTCACAGAACCTTGCTACGTACACAAGGACATAAGCAGTGGAAACGTTCTACTGAACAAAGATTTAAGGGCCAAGATAGCAAATTTTGCTCGTGCTGAAGAATCAAAAAGGATGATAACTTCTGGCTGTCCCACATCACATGTTGTAGGATCTGTCGGTTATTTGGCTCCCGAGTATCTCGAGGCAGGGGTAGTCAGCACCAAAATGGACATCTATGCCTTTGGAGTTGTGTTGTTGGAATTGATCAGTGGCAAAGATTCTATTACCCTACGAGATGGAAGAGAAGTAATGCTTTGTGAAATCATAGAAAATATCATTGGTAAAGAGAATGAAGAAGAGAAGGTGAGTTTGTTCATTGATCCTTGCCTCGCTGAAAACTGTGGGAAAGCATGTGCACTGCAGCTAGTTAAACTGAGTTTAGCCTGCTTGATCCAAGAACCAGAAAACAGACCAAACATTGAAGAGGAATTTGTAGAGGTTGGGAGGTGGCTAAACAAATAA 1872 0.3787 MNQVVFNFIFFTLSILFSSKTKAQQNYSGNSILSCKNNDDTGPSPAFLYTCNGLNRSCLTFLTFKSNPPYNSVTTISNLTSSNPDELARINRATLATVFPPGKEVIVPVNCSCLTKDYYQAETKYILGLNPTYFIVANDTFQGLSTCDSLMRANPYGELDLHIGIELHVPLRCACPTYHQKKNGTKYLLTYSVNWGDNISNIAKKFNIAVGNLLDANGFSAETQLYPFTTVLIPLASEPVSLTTIVANDPPPPPTPPPPTSLGCSFKKCKSNRKVLLIALTTSVLVLCVFLFVLFMFLFLLRKRSARFLKRGTQFNNKKGVFSEEIREEIAIIEHLSKVYSFEEIKEATENFSPKNIIEGSLFRGVFDNGKEVLAVKRMRRDASTEINLLKRINHFNLIKLQGYCENNDCIYLVYEYIENGSLREWLSKNRCIEHQSWEKRIQIALDIANGLQYLHNFTEPCYVHKDISSGNVLLNKDLRAKIANFARAEESKRMITSGCPTSHVVGSVGYLAPEYLEAGVVSTKMDIYAFGVVLLELISGKDSITLRDGREVMLCEIIENIIGKENEEEKVSLFIDPCLAENCGKACALQLVKLSLACLIQEPENRPNIEEEFVEVGRWLNK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00340 623 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
Tsu01g00340 623 Gene3D Phosphorylase Kinase; domain 1 313 417 - -
Tsu01g00340 623 SUPERFAMILY Protein kinase-like (PK-like) 334 612 IPR011009 -
Tsu01g00340 623 Gene3D Transferase(Phosphotransferase) domain 1 418 623 - -
Tsu01g00340 623 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 8 612 - -
Tsu01g00340 623 ProSiteProfiles Protein kinase domain profile. 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00340 623 Pfam Protein kinase domain 377 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00340 623 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 612 - -
Tsu01g00340 623 SMART LysM_2 190 234 IPR018392 -
Tsu01g00340 623 CDD LysM 190 233 IPR018392 -
Tsu01g00340 623 SUPERFAMILY LysM domain 189 234 IPR036779 -
Tsu01g00340 623 Pfam LysM domain 191 234 IPR018392 -
Tsu01g00340 623 Gene3D LysM domain 189 243 IPR036779 -
Tsu01g00340 623 ProSitePatterns Tyrosine protein kinases specific active-site signature. 463 475 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00340 Tsu-Chr1 2794377 2796916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00340 6 621 Receptor kinase-like Gene Family AT2G23770 37.658 2.38e-119 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu01g00340 Pkinase 1.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00340 - - gmx:100806221 815.453