Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00338 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTCCCTACTCgagcaataataataacaatgatgCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGATCCTATTATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCATTTTCACTCACAGTCACGAGAATGCCCAGTTTGTAAGGCGATGATTGAGGAGGAGAAGTTGGTTCCTTTATATGGGAGAGGAAAGACGTCAACTGATCCAAGATCGAAATCTATTCCCGGTGTTAATATCCCTCATCGTCCTGCCGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTTCTCAACATGGATTTGGATTCGCAGGTGGATTGGGTGGGTTGGGAGGATTTGCACCAGCAACAACTGCAAGATTTGGGAATTTCACATTTTCTGCAGGATTTGGCAGTTTTATACCATCCTTATTTAACTTTCAGATGCATGGATTTCACGGTGGAGCCATGTATGGCGGAGCAGCTGGTTTCCCTTATGGATTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCCGCACACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTgatgtttgttattttttgcGTGGTACTTGCTCTGCTTTGGCAATAG 699 0.4235 MASGFGESTSRSPPSPPYSSNNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFAGGLGGLGGFAPATTARFGNFTFSAGFGSFIPSLFNFQMHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPPHTGQGQQDYYLKRLLMFVIFCVVLALLWQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00338 232 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Tsu01g00338 232 MobiDBLite consensus disorder prediction 86 123 - -
Tsu01g00338 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 - -
Tsu01g00338 232 CDD RING-HC_AtRMA_like 30 74 - -
Tsu01g00338 232 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g00338 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu01g00338 232 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Tsu01g00338 232 PANTHER OS12G0636000 PROTEIN 2 232 - -
Tsu01g00338 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 86 IPR013083 -
Tsu01g00338 232 SUPERFAMILY RING/U-box 29 85 - -
Tsu01g00338 232 SMART ring_2 32 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00338 Tsu-Chr1 2769220 2771588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00338 30 215 C3H Transcription Factor Family AT1G19310 68.394 9.93e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00338 K10666 - zju:107420294 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00338 01 2769220 2771588 Tsu01g00338 01 2769220 2771588 ECH