Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00300 ATGGGTGGAGCTGGAATGACAACTTACTTCTTCACAATGTTATCAGGTATATGGGTgATTGTGGAGAGAGATAACAAAGGTATTGTTAAGACACTTGAACAATGTGGTATTGTTAAGATCCATCAGAAGCAGGTACTTCCAAAGGCTGCTCTTGCTACCGCAATCGCAACGGTATCTTATCAACTCAATATTCTTCGTGCAAATGGTCCTAGGCAAATACATTGTACAATGCACTTAATTCCCATGTCCTCAGTCAGAGAAGGAGGAACTGCTCCTACTCCTTTGGAATTTAGCTCAACTCTCAGTGATTTTGAAAGAGAACCACTGATTTTGGAAAACAAAGCTCCTAGCTGGCATGAACAACTGCATGTTGGTGCttga 381 0.4094 MGGAGMTTYFFTMLSGIWVIVERDNKGIVKTLEQCGIVKIHQKQVLPKAALATAIATVSYQLNILRANGPRQIHCTMHLIPMSSVREGGTAPTPLEFSSTLSDFEREPLILENKAPSWHEQLHVGA 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00300 126 PRINTS Tubby superfamily signature 111 126 IPR000007 -
Tsu01g00300 126 PRINTS Tubby superfamily signature 52 79 IPR000007 -
Tsu01g00300 126 PANTHER TUBBY-LIKE F-BOX PROTEIN 39 105 - -
Tsu01g00300 126 PANTHER TUBBY-LIKE F-BOX PROTEIN 102 124 - -
Tsu01g00300 126 Pfam Tub family 38 123 IPR000007 -
Tsu01g00300 126 Gene3D Tubby Protein; Chain A 17 125 IPR025659 -
Tsu01g00300 126 PANTHER TUBBY-RELATED 39 105 - -
Tsu01g00300 126 PANTHER TUBBY-RELATED 102 124 - -
Tsu01g00300 126 SUPERFAMILY Tubby C-terminal domain-like 44 123 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00300 Tsu-Chr1 2448103 2448823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00300 55 123 TUB Transcription Factor Family AT1G47270 44.186 8.46e-19 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00300 Tub 1.2e-14 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00300 K19600 - gmx:100796250 98.9821