Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00296 ATGAGTTTCAGAATTTTACTTTCACTTCGTTCTTCAAGAACCGCAATCACAAAACTCAAATCAATCTCAAATTCCCAATTTTCCACTATTCTCTTCAATCGATTTCCCGATTCATCAATCTCCGGTCACCGGAACCTCCATTCGCATTCACCTGAACTCGGTAACTCGTTAATCGACCCGTCACTAAAAATTCACTTAAACGACAATGCCGTTCAACAAAACGACGATGAAGACGAAACTACCAACGAGTTTCTCTCACGATTCGCTTGGATAATGAGGAAAAAGGTGAAGGAATCGTATCCTGAATGCGATAAAAGCACTGTTGATGGAATGCTAGTTTTGATTGTTGAAAGAGTTGTTTCAGAAATGGAAAAAGGTGGTGGCGGAGGCGGCGGTGGTGATGAGAAAATGGTGGTTGATTCGGTGGATTTTAGTGAGGATCTTTGGAAGACTGTGTGGGAGGTTAGTAATAAGGTTTTGGTTGATATGAATAAAGAGAGGAAGAAGGAGAAAATGAAGAGTTTTTTGCAGTGTGATGAGGTTAAAGAGATGTGTAGATTTGCCGGTGAAGTTGGTATTCGAGGCGATTTGCTTAGAGAGCTTAGGTTTAAATGGGCACGTGAGAAAATGGAGGAACATGAGTTTTATGAGGATTTGGAGAAATTAAGGAAAGAGGGACAAGTTATTGAAGatgaaacaaaacatgaaagTGACACCGAAACAGAAACGGATGTTGGTGTTCGTGTTGATGGTAGTGTTGAGGAGAAGAGTGAGAATAAGGTTGTTGGGCTTCCTAAGAGGAAGGGGAAATTGAAGTTTAAGATTTATGGACTTGATTTATCTGATCCTAAATGGGAACAAGTGGCTGATAGGATTCATGAGGCAGGCGAAGTTCTTTGGCCGAAGGAGGTGAAGCCGATAACTGGGAAATGCAAACTAGTTACCGAGAAAATTCTGTCGTTGAAGGAGAAGGATGGAGATGATAGTTTGTTAGCCCTTTTGGCTGAGTGGGTAGAGCTTCTGCAGCCTGCTAGGGTGGATTGGTTGAATTTACTTGAAAGGTTGAAAAATCAGAATTCTCCTTTGTACTTCAAGGTGGCAGAAAGGGTATTGACTGAAGATTCTTTCCAAACAAATATATCTGACTACTCTAGGCTTATTGATATGTATGCTAAAGAGAACCGCATTGATGATACTGAGAGGGTGCTTGAGAAGATGAATGAAAATGGTATACAACCAGATACTTCGATAGCCAGTGTATTGGTCCACATGTACAGCAAGATAGGTAATCTTGAACGTGCAGAAGAGGCATTTAAAATCTTGAGTAGCCATGGTTTCCAACCGGACTCCAAAGTCTACAACTCAATGATCATGGCCTACATAAATGCCGGTGAACCTACAAAGGGCGAGACCCTGATGAGGCAGATGGAGGAGACAAGAGATATTAAGCCCACAAAGGAAATATACATGGCATTGCTCCGACATTATTCTCAACGTGGTGACTTTGATCGTGCCTCGCGAACTTCAACATCTATGCAATTTGCAGGACACCAGCAGACTCTGGAAACATGCACCCTGCTTATTGAAGCAGCTGCAGTTGCAGGTGACGTAGATAAGGTAACCTCCAATTTTGACCACATGGTACAACTTGGGCATAAGCCTAATGATAGGTGCACTGCTGCCATGATTCGTGCTTATGAGAAGACAAATTTATTGGACAAGGCATTGGATCTTCTTTTGACGTTAGAGAAAGATGGGTTTGAGCCTGGGGTTGCAACTTATTCTGTTCTTTTGGAATGGATGGCTAAAATGCAGCTTGTCGATGAGACTGAAcagattttaaacaaaattgcTCTGCTGGGTGAAGCTCCTCCTTTTAGGGTTCAAGTTAGTCTTTGTGATATGTATGCAAGGACTAAAATGGAGAAAAAGGCCCTTCAAACACTAGGCGTTCTGATAGCTAGGAAGGACGAATTACGAGAACATCAGTTTGAGAGGATTATTGCCGGCCTTATTAGTGGTGGGTTTTTGCGGGATGCACAAAGAATGCATGGGATCATGGAGGAACAGGGTTTCAAAGCTTCTGGACAACTTATTTCAGCCCTTAAATCTGGCCACGTACCTTTCAGTATGAGGTAA 2139 0.4161 MSFRILLSLRSSRTAITKLKSISNSQFSTILFNRFPDSSISGHRNLHSHSPELGNSLIDPSLKIHLNDNAVQQNDDEDETTNEFLSRFAWIMRKKVKESYPECDKSTVDGMLVLIVERVVSEMEKGGGGGGGGDEKMVVDSVDFSEDLWKTVWEVSNKVLVDMNKERKKEKMKSFLQCDEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEDLEKLRKEGQVIEDETKHESDTETETDVGVRVDGSVEEKSENKVVGLPKRKGKLKFKIYGLDLSDPKWEQVADRIHEAGEVLWPKEVKPITGKCKLVTEKILSLKEKDGDDSLLALLAEWVELLQPARVDWLNLLERLKNQNSPLYFKVAERVLTEDSFQTNISDYSRLIDMYAKENRIDDTERVLEKMNENGIQPDTSIASVLVHMYSKIGNLERAEEAFKILSSHGFQPDSKVYNSMIMAYINAGEPTKGETLMRQMEETRDIKPTKEIYMALLRHYSQRGDFDRASRTSTSMQFAGHQQTLETCTLLIEAAAVAGDVDKVTSNFDHMVQLGHKPNDRCTAAMIRAYEKTNLLDKALDLLLTLEKDGFEPGVATYSVLLEWMAKMQLVDETEQILNKIALLGEAPPFRVQVSLCDMYARTKMEKKALQTLGVLIARKDELREHQFERIIAGLISGGFLRDAQRMHGIMEEQGFKASGQLISALKSGHVPFSMR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00296 712 TIGRFAM PPR: pentatricopeptide repeat domain 383 415 IPR002885 -
Tsu01g00296 712 TIGRFAM PPR: pentatricopeptide repeat domain 452 485 IPR002885 -
Tsu01g00296 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Tsu01g00296 712 PANTHER OS07G0661900 PROTEIN 13 704 IPR044657 -
Tsu01g00296 712 Pfam Pentacotripeptide-repeat region of PRORP 391 505 IPR033443 -
Tsu01g00296 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 479 IPR002885 -
Tsu01g00296 712 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 13 704 - -
Tsu01g00296 712 Coils Coil 389 409 - -
Tsu01g00296 712 Pfam PPR repeat 561 587 IPR002885 -
Tsu01g00296 712 Gene3D Tetratricopeptide repeat domain 495 706 IPR011990 GO:0005515
Tsu01g00296 712 MobiDBLite consensus disorder prediction 227 250 - -
Tsu01g00296 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Tsu01g00296 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Tsu01g00296 712 Gene3D Tetratricopeptide repeat domain 317 468 IPR011990 GO:0005515
Tsu01g00296 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00296 370 707 Glycosyltransferase AT1G05670 21.006 7.95e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00296 - - gmx:100794017 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00296 01 2425269 2428118 Tsu01g00296 01 2425269 2428118 ECH