Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00294 ATGAGTTTCAGAGTGAGGCGAATATATTGTACATTGCACTTAATTCCTATGTCCTCAGTCAGAGAAGGAGGAACTGCTCCTACTCCTTTGGAATTTAACTCAACTTGCACTGATGTTGAAAGTGAACCAttgattttggaaaacaaaGCTCCTAGATGGAATGTACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGGGTCACGGTGGCTTCGGTGAAGAATTTTCAACTGATAACATCTGCAGAAGCTTATCAACTTATACCGGATGCAGATGATGAGACCGTTATACTACAATTTGGAAAAATTGGGAAGGAAGGACCTATTCACTATGGATTATCGATATCCTCTGTCCGCTTTTCAAGCCTTTGCAATCTGCTTGAGTGCCTTTGA 393 0.3995 MSFRVRRIYCTLHLIPMSSVREGGTAPTPLEFNSTCTDVESEPLILENKAPRWNVQLQCWCLNFKGRVTVASVKNFQLITSAEAYQLIPDADDETVILQFGKIGKEGPIHYGLSISSVRFSSLCNLLECL 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00294 130 Gene3D Tubby Protein; Chain A 2 109 IPR025659 -
Tsu01g00294 130 PANTHER TUBBY-LIKE F-BOX PROTEIN 38 106 - -
Tsu01g00294 130 SUPERFAMILY Tubby C-terminal domain-like 6 106 IPR025659 -
Tsu01g00294 130 PANTHER TUBBY-LIKE F-BOX PROTEIN 6 35 - -
Tsu01g00294 130 ProSitePatterns Tub family signature 1. 64 77 IPR018066 -
Tsu01g00294 130 PRINTS Tubby superfamily signature 46 63 IPR000007 -
Tsu01g00294 130 PRINTS Tubby superfamily signature 64 80 IPR000007 -
Tsu01g00294 130 PRINTS Tubby superfamily signature 93 112 IPR000007 -
Tsu01g00294 130 PANTHER TUBBY-RELATED 6 35 - -
Tsu01g00294 130 Pfam Tub family 6 106 IPR000007 -
Tsu01g00294 130 PANTHER TUBBY-RELATED 38 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00294 Tsu-Chr1 2420835 2421227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00294 6 124 TUB Transcription Factor Family AT1G47270 47.857 5.69e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00294 Tub 9.1e-30 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00294 K19600 - dcr:108223427 135.961