Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00292 ATGATATGCACCACAATTTCTTTCAGAATGGCGAAAGAGGAAGTGAAATCAGTTGTTCCTGAATCCGTTTTGAAGAAGCAGAAAAGGAACGAAGAATGGGCTTTGGTGAAAAAGCAAGAAGTTGAATCAGCAAAGAAGAAGAGATCTGAAACTAGGAAACTCATTTGGAGTAGAGCCAAACAGTATGCTAAGGAATATGATGAACAGGAGCTAGAATGA 219 0.3881 MICTTISFRMAKEEVKSVVPESVLKKQKRNEEWALVKKQEVESAKKKRSETRKLIWSRAKQYAKEYDEQELE 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00292 72 Pfam Ribosomal L30 N-terminal domain 19 70 IPR012988 -
Tsu01g00292 72 PANTHER 60S RIBOSOMAL PROTEIN L7 16 72 - -
Tsu01g00292 72 PANTHER 60S RIBOSOMAL PROTEIN L7 16 72 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00292 Tsu-Chr1 2402084 2404776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00292 10 72 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 68.254 5.49e-22 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00292 K02937 - cam:105852500 105.531