Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00291 ATGTCATTCAAGAGCATTATGAGAGAGCTCAAGGAAATGAAAGAGGGACTTAGCAAAATGTATAGAAGAGGTGCTCCTCTATGTTCCTCACCAACCACAGAATCATCATCATATGGCCAGTGGGCTAACTTACCTTATGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCTCGTGGCCATCTCGTCGAGCACTTGTAGCTTGTGCGTCAGTTTGTAGATCGTGGAGAGAGATAACAAAGGGTATTGTTAAGACACTTGAACATTGTGGTATGTTCACTTTCCCTGTATCATTGAAACAGCCTGCTCCAAGGGACAATCCGATTGAGTGTTTCATTAAGAGAGACAGGGATAATTCCACTTATAGTTTATATCTTGGTTTGAACCCTGCTCTTTCCGGAGAAAATAGCAAACTGCTCTTAGCAGCAAAGAATATTAGAAGAGCAACGTGTACAGAAGTTTTAATATCATTGGTTGCTCATGATTTCTCTAAGACTTACATTGGAAAGATAAGGACTAATTTTATCGCCGCCAAGTTCATGATATTCGACGGTCATCCTCCACATGATTCTTCACTTCCATTGAGTTGTATATTGCCGCAAAGGATCCATCAGAAGCATGTACTGCCAAAGGCTGCTCCTGATACCTGTACAATGCACTTAATTCCTATGTCCTCAGTTAGGGAAGGAGGAATTGCTCCTATTCCTTTGGAATTTAGCTCAACTTGCACTGGTGTTGAAAGTGAACCAttgattttggaaaacaaaGCTCCTAGATGGAATGTACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGGGTCACGGTGGCTTCAGTGAAGAATTTTCAGCTCATAATATCTGCAGAACCTTATCAACTTATACCAGATGCAAATGATGAGACTGTTATACTACAATTTGGAAAAATTGGGAAGGACCTATTCATTATGGATTATCGATATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGCTTGAGTGCCTTTGACAAAAAACCAATCTTTAATGGTGTCTTTCTCAAAGTTAACAAAGCCACTGCTCCACAGGGTTCTCAAGCTTCGTTCAACCTTCAAGCTTCAGCTGGGGAAACTTCATGTGGCTATGTGTTTACTTACAAACATATGGAATCATCTCATAACGAATCAACTGCATCTATGATGTTAATTGGGGAACACTTGCTTGATGGCCACACATCTACATTTGTCAATGCATTTGTAAATGTTGGCTTTGGTCAGGATAAATTGATGACTGATACATCAGATTCTTCAAGCAGTTTCAGGAAATTGGCTCAAGagATTCATTTGACCCTGATGAGCAAGGGAAGAGTAATGAACCAACTAGATTGGCCAGGCCCAAATAAGAGTGTGTCAACTAAGGCCCAAGAAACGAAAATAATCAAGGTCACTATGCTTTAG 1446 0.4011 MSFKSIMRELKEMKEGLSKMYRRGAPLCSSPTTESSSYGQWANLPYELLLDIIQRVEASETSWPSRRALVACASVCRSWREITKGIVKTLEHCGMFTFPVSLKQPAPRDNPIECFIKRDRDNSTYSLYLGLNPALSGENSKLLLAAKNIRRATCTEVLISLVAHDFSKTYIGKIRTNFIAAKFMIFDGHPPHDSSLPLSCILPQRIHQKHVLPKAAPDTCTMHLIPMSSVREGGIAPIPLEFSSTCTGVESEPLILENKAPRWNVQLQCWCLNFKGRVTVASVKNFQLIISAEPYQLIPDANDETVILQFGKIGKDLFIMDYRYPLSAFQAFAICLSAFDKKPIFNGVFLKVNKATAPQGSQASFNLQASAGETSCGYVFTYKHMESSHNESTASMMLIGEHLLDGHTSTFVNAFVNVGFGQDKLMTDTSDSSSSFRKLAQEIHLTLMSKGRVMNQLDWPGPNKSVSTKAQETKIIKVTML 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00291 481 SUPERFAMILY Tubby C-terminal domain-like 91 343 IPR025659 -
Tsu01g00291 481 ProSitePatterns Tub family signature 1. 274 287 IPR018066 -
Tsu01g00291 481 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 215 - -
Tsu01g00291 481 Pfam F-box domain 41 88 IPR001810 GO:0005515
Tsu01g00291 481 Pfam Tub family 102 340 IPR000007 -
Tsu01g00291 481 Gene3D - 35 86 - -
Tsu01g00291 481 PANTHER TUBBY-RELATED 1 215 - -
Tsu01g00291 481 PANTHER TUBBY-RELATED 250 344 - -
Tsu01g00291 481 PANTHER TUBBY-RELATED 220 245 - -
Tsu01g00291 481 SUPERFAMILY F-box domain 38 85 IPR036047 GO:0005515
Tsu01g00291 481 PANTHER TUBBY-LIKE F-BOX PROTEIN 250 344 - -
Tsu01g00291 481 PANTHER TUBBY-LIKE F-BOX PROTEIN 220 245 - -
Tsu01g00291 481 Gene3D Tubby Protein; Chain A 97 346 IPR025659 -
Tsu01g00291 481 PRINTS Tubby superfamily signature 274 290 IPR000007 -
Tsu01g00291 481 PRINTS Tubby superfamily signature 303 322 IPR000007 -
Tsu01g00291 481 PRINTS Tubby superfamily signature 324 346 IPR000007 -
Tsu01g00291 481 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Tsu01g00291 481 PRINTS Tubby superfamily signature 256 273 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00291 Tsu-Chr1 2396094 2401100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00291 32 344 TUB Transcription Factor Family AT1G47270 51.989 1.41e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00291 Tub 2e-69 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00291 K19600 - gmx:100796250 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00291 01 2396094 2401100 Tsu01g00291 01 2396094 2401100 ECH