Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00290 ATGACTAATTTTATCGGCACCAAGTTCTTGATCTTCGACGGTCATCCTCCACATGATTCTTCACTTCCATTGAGCTGTATGTTGCAGCAAAGGATCCATCAGAAGCAGGTACTTCCAAAGGCTGCTCCTGCAACCGCAACGGTATCTTATCAACTCAATATTCTTCTTGCAAATGGTCCGAGGCGAATACATTGTACAATGCACTTAATTCCTATGTCCTCAGTCGGAGAAGGAGGAACTGCTCCTACTCCTTTGGAATTTAGCTCAACTTGCACTGATTTTGAAAGAGAACCACTGATTTTGGAAAACGAAACTCCTAGATGGCATGAACAACTGCAATACTGCGGTTGCATCGACAAACAGAAGAACTACTATTTGATTTGCAGAACTCAAGCAAAGAAGATATTGGCTTCCTTGATTGGAATTGGATTCCTTGTTTTGCAACAGTTTTCTGGGATTAACGGTGTTCTTTTTTATTCCAGTACTATCTTCCAAAATGCGGGAATTAGTTCGAGTGAAGCAGCTACATTTGGAGTTGGCGCTGTTCAGGTTCTTGCTACCACTTTAACTTTGTGGTTAACAGACAAATCCAGTTGCCGGCTTCTACTTATTGTTTCTTCATCTGGAATGACTTTGAGTCTCTTGGTTGTTTCAATCGCATTCTACTTAAAgGTTCTTGGGAAGCACGGTATCATCTGCATCGAAGATTTGATTCATGAGATACTGACTGTTGGTCCTCATATTCTATGGCAGTTTTGCTTTGAAAAGATTTTCATCTGTTGTTCTGACTCATGCCTTGCCTGCAAAGATTTTCGTGTTTTGATTACTTGTTTTTATGCTCAACCTGATATATGGTTTCTGATGCTTTTCTTAAAGAAGTTTTTCTTAGAGAATAGTATGCCTCAAGCCACTTTGCAGCCTGATGTCAATAACAAAGAAATTTGCAGACCAATACATGTTGGGCTCATGAAAGGCCCACCTTGCTAA 987 0.4022 MTNFIGTKFLIFDGHPPHDSSLPLSCMLQQRIHQKQVLPKAAPATATVSYQLNILLANGPRRIHCTMHLIPMSSVGEGGTAPTPLEFSSTCTDFEREPLILENETPRWHEQLQYCGCIDKQKNYYLICRTQAKKILASLIGIGFLVLQQFSGINGVLFYSSTIFQNAGISSSEAATFGVGAVQVLATTLTLWLTDKSSCRLLLIVSSSGMTLSLLVVSIAFYLKVLGKHGIICIEDLIHEILTVGPHILWQFCFEKIFICCSDSCLACKDFRVLITCFYAQPDIWFLMLFLKKFFLENSMPQATLQPDVNNKEICRPIHVGLMKGPPC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00290 328 Pfam Sugar (and other) transporter 135 228 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tsu01g00290 328 SUPERFAMILY Tubby C-terminal domain-like 2 114 IPR025659 -
Tsu01g00290 328 Gene3D Tubby Protein; Chain A 1 137 IPR025659 -
Tsu01g00290 328 Pfam Tub family 2 113 IPR000007 -
Tsu01g00290 328 Gene3D MFS general substrate transporter like domains 138 267 IPR036259 -
Tsu01g00290 328 PRINTS Tubby superfamily signature 101 118 IPR000007 -
Tsu01g00290 328 PRINTS Tubby superfamily signature 42 69 IPR000007 -
Tsu01g00290 328 SUPERFAMILY MFS general substrate transporter 138 220 IPR036259 -
Tsu01g00290 328 PANTHER SUGAR TRANSPORTER ERD6-LIKE 6 135 228 - -
Tsu01g00290 328 PANTHER - 135 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00290 Tsu-Chr1 2390479 2393095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00290 139 224 Organic Solute Cotransporters AT1G75220 67.442 8.48e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00290 Sugar_tr 1.1e-18 CL0015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00290 K03444 K19600 gmx:100796250 146.747