Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00276 ATGAAAACCAACCGATTCACAATATTATTAGGGAAATGGGTGGTAAGAAAACTAAAATCCTATTCTCTTAAATTTGTCAAAGCACTCCATCCTGATAAGTCTGTTTTACATGTTTCCTTAGGAATTGGAAATCTCAGTCTAATGAAGCTTTTAAAGCAGTGTAAGTGCCACTTCGTTATGATGAATCTGCATCATGTGTGTTTCCTTATGAGCTGGAATGACAACTTACTTCTTCACAATATTATCAGATTTCTAGTGCTACGTATATACACACAACATATCATAATGTCATTCAAGAGCATTATGAGAGAGCTCAAGGAAATGAAAGAGGGACTTAGCAAAATGTATAGAAGAGGTGCTCCTCTATGTTCCTCACCAACCACAGAATCATCATCATATGGCCAGTGGGCTAACTTACCTTATGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCTCGTGGCCATCTCGTCGAGCACTTGTAGCTTGTGCGTCAGTTTGTAGATCGTGGAGAGAGATAACAAAGGGTATTGTTAAGACACTTGAACAATGTGCTCTTTCTGGAGAAAATAGCAAACTGCTCTTAGCAGCAAAGAAGATTAGAAGAGCAACGTGTACAAAATTTTTAATATCATTGGTTGCTCATGATTTCTCTAAAACTTACATTGGAAAGATAAGGTTAGTGTCCTCAATCCGCATCTTTTCATGGTTAATGCCTTATTTGACTGCTTACTTGATCTGTAAGCAATGA 762 0.374 MKTNRFTILLGKWVVRKLKSYSLKFVKALHPDKSVLHVSLGIGNLSLMKLLKQCKCHFVMMNLHHVCFLMSWNDNLLLHNIIRFLVLRIYTQHIIMSFKSIMRELKEMKEGLSKMYRRGAPLCSSPTTESSSYGQWANLPYELLLDIIQRVEASETSWPSRRALVACASVCRSWREITKGIVKTLEQCALSGENSKLLLAAKKIRRATCTKFLISLVAHDFSKTYIGKIRLVSSIRIFSWLMPYLTAYLICKQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00276 253 SUPERFAMILY F-box domain 133 179 IPR036047 GO:0005515
Tsu01g00276 253 Pfam F-box domain 136 183 IPR001810 GO:0005515
Tsu01g00276 253 PANTHER TUBBY-RELATED 193 230 - -
Tsu01g00276 253 PANTHER TUBBY-RELATED 96 190 - -
Tsu01g00276 253 Gene3D Tubby Protein; Chain A 149 236 IPR025659 -
Tsu01g00276 253 PANTHER TUBBY-LIKE F-BOX PROTEIN 96 190 - -
Tsu01g00276 253 PANTHER TUBBY-LIKE F-BOX PROTEIN 193 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00276 Tsu-Chr1 2281262 2282783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00276 96 230 TUB Transcription Factor Family AT2G18280 42.391 2.10e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00276 Tub 4.2e-06 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00276 K19600 - gmx:100796250 172.17