Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00275 ATGATATTCGACGGTCATCCTCCACATGATTCTTCACTTCTATTGAGCTGTATATTGCCGCAAAGGATCCATCAGAAGCAGGTACTTCCAAAGGCTGCTCCTGCTACCGTAACCGTAACGGTATCTTATCGACTCAATATTCTTCCTGCAAATGGTCTGAGGCGAATACAGTGTACAATGCACTTAATTCCTATGTCCTCAGTCAGAGAAGGAGGAACTGCTCCTACTCCTTTGAAATTTAGCTCAACTTGCACTGATTTTGAAAGTGAACAGCTGATTTTGGAAAACAAAGCTCCTAGATGGAATCAACAACTGCAATGTTGGTGCTTGAATTTTAAGGGACGGGTCACGGTGGCTTCGGTGAAGAATTTTCAGCTCATAATATCTACAAAACCTTATCAACTTATACCGGATGCAGATGATGAGACTGTTATACTACAATTCGGAAGAATTGGGAAGGACATATTCACTATGGATTATCGATATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGCTTGAGTGCCTTTGACACAAAACCAGTTTGTGAATGA 555 0.4162 MIFDGHPPHDSSLLLSCILPQRIHQKQVLPKAAPATVTVTVSYRLNILPANGLRRIQCTMHLIPMSSVREGGTAPTPLKFSSTCTDFESEQLILENKAPRWNQQLQCWCLNFKGRVTVASVKNFQLIISTKPYQLIPDADDETVILQFGRIGKDIFTMDYRYPLSAFQAFAICLSAFDTKPVCE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00275 184 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 89 - -
Tsu01g00275 184 ProSitePatterns Tub family signature 1. 112 125 IPR018066 -
Tsu01g00275 184 PRINTS Tubby superfamily signature 94 111 IPR000007 -
Tsu01g00275 184 PRINTS Tubby superfamily signature 162 184 IPR000007 -
Tsu01g00275 184 PRINTS Tubby superfamily signature 141 160 IPR000007 -
Tsu01g00275 184 PRINTS Tubby superfamily signature 35 62 IPR000007 -
Tsu01g00275 184 PRINTS Tubby superfamily signature 112 128 IPR000007 -
Tsu01g00275 184 PANTHER TUBBY-RELATED 86 184 - -
Tsu01g00275 184 PANTHER TUBBY-RELATED 2 89 - -
Tsu01g00275 184 Gene3D Tubby Protein; Chain A 2 184 IPR025659 -
Tsu01g00275 184 Pfam Tub family 2 179 IPR000007 -
Tsu01g00275 184 SUPERFAMILY Tubby C-terminal domain-like 2 184 IPR025659 -
Tsu01g00275 184 PANTHER TUBBY-LIKE F-BOX PROTEIN 86 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00275 Tsu-Chr1 2280678 2281232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00275 39 184 TUB Transcription Factor Family AT1G47270 56.627 8.36e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00275 Tub 1.6e-57 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00275 K19600 - gmx:100796250 246.514