Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00262 ATGTATCCGAATCAAGCGTTTTCTTCGGGATCTTATGCCGAGATGATTTCTGGGAATACTTTGTTACCTCATAACTACAGTGAATCTATAGGAGGACAAAATGAGTTGAAGTTTATGACATCTATGAACGACACAATGAATATGCAGCATATCAATGAGGGTCATTCTAATGATGCTACGAACTATCCAAGGACACAATTTGGACTCGTTGACGGCGAGCAAAATGTGCAATTGCAAGGCTTGTCTCTTAGCCTTGGGACAATGATGCCTTCATTTCAATATCAGTATCCCGGAAACGGTTTCACCTCGCTAATGAATGCTCAAATTTCAAACTTAAAGGAGTCTGCGTCTCTTAAAGATGACCAGGAATTGAGAAATGCTGAGTGCATTGCATCTATGTCCTCTGGAGGATTTCACAACAGTGTCAAAAGGGAGGGTTTGTATAATCCACAACACCACTCAATGGGCCTTAATGAAGGCCAATCTGATCCGTGCATGCACGGATCAGCGGTTATTCCGAACAATTCCCTTAACTCACATTACCTTAAGGCAGCGCAGGAATTGCTTGATGAAATAGTTAATATCCGAAAGGGATTGAAACAAACTGGATCGGAAAAACAACAAAGTTTCCGTGACACTGGTTTAGATGGTTCCAAAGATTCTGATGGAAAATCTACAAGTCAAATATCTCCAGGTCCTAATGGTTCTAATGCAAACAACCCTTCATGTGAACTATCACCTGCCGAACGACAGCATTTGTTGgacaagaaaacaaaacttttggCCATGTTGGATGAGGTAGACAAAAGATACCGACAATACTGTCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGTGGTGGAGCTGCTGAACCATACACTGCTCTTGCTTTGCGCACAATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCTTAGGAGAACAAGAGGGAATACCCCGTCTCCGCTACGTGGATCAACAACTTAGACAACAAAAAGCCCTTCAACAGCTTGGTGTAATGAGACAAGCATGGAGACCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTTCGTGCATGGCTCTTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGTTGGCAAGACAAACTGGCTTGACCCGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTACGTCTTTGGAAACCAATGGTCGAAGAAATGTACAAAGAAGAGTTTGGTGATTCGGAGACAAGCAGCAATCTTTTATCAGAAAACACACTGAAAGCTCCGAGAGACGATGATGTTCGAGTGTTGGATGATAAAAGGGAAGAATCACAGGACAAGTTAACAACTACTGATAGTGTTCAACAAGGTCAAATTGCAGGATTGAAGATGGATCATGCATCCTCCTCCACCACCGCCGCGACAGAATTCGATAGAGGGCTTCAAAGTAATGTTCATTGGACAAATATGATGGATTCTAGAATTGGGAAAATGCAGGGTGACCAACAAAGGTTTAACATGAACAATAGTCCTTATTCAAATGCACCTATCTCAATCAACCAAAATGGTGATGGTTGCATAATGGATTCTACTCCTACTACTTATGATGATTTATCAGAGTTGAGTAACTTTGGTGTTGGTGGCCATGTCTCACTTGCATTAGAGTTGAGGAACTCTGAAAGTGATGGATTTGGTTTGTCGAATGATGACATCAATAAAAGGCGTAACCAAACATTGGCTTCTTCATCAGATACTGATTTGTTAGATTATCATTTCACAGACAATGGAAAGCAACAACACAAGTTTGGCAACCCTCATTTATTACATGAGTTTGTTGTCTGA 1896 0.4114 MYPNQAFSSGSYAEMISGNTLLPHNYSESIGGQNELKFMTSMNDTMNMQHINEGHSNDATNYPRTQFGLVDGEQNVQLQGLSLSLGTMMPSFQYQYPGNGFTSLMNAQISNLKESASLKDDQELRNAECIASMSSGGFHNSVKREGLYNPQHHSMGLNEGQSDPCMHGSAVIPNNSLNSHYLKAAQELLDEIVNIRKGLKQTGSEKQQSFRDTGLDGSKDSDGKSTSQISPGPNGSNANNPSCELSPAERQHLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGGGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENTLKAPRDDDVRVLDDKREESQDKLTTTDSVQQGQIAGLKMDHASSSTTAATEFDRGLQSNVHWTNMMDSRIGKMQGDQQRFNMNNSPYSNAPISINQNGDGCIMDSTPTTYDDLSELSNFGVGGHVSLALELRNSESDGFGLSNDDINKRRNQTLASSSDTDLLDYHFTDNGKQQHKFGNPHLLHEFVV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00262 631 SMART prehox3 166 318 IPR006563 -
Tsu01g00262 631 MobiDBLite consensus disorder prediction 200 245 - -
Tsu01g00262 631 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677|GO:0006355
Tsu01g00262 631 Coils Coil 182 202 - -
Tsu01g00262 631 MobiDBLite consensus disorder prediction 444 466 - -
Tsu01g00262 631 MobiDBLite consensus disorder prediction 220 245 - -
Tsu01g00262 631 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 593 - -
Tsu01g00262 631 SUPERFAMILY Homeodomain-like 360 426 IPR009057 -
Tsu01g00262 631 Pfam Associated with HOX 178 317 IPR006563 -
Tsu01g00262 631 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677
Tsu01g00262 631 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 593 - -
Tsu01g00262 631 CDD homeodomain 359 420 IPR001356 GO:0003677
Tsu01g00262 631 MobiDBLite consensus disorder prediction 428 471 - -
Tsu01g00262 631 Gene3D - 356 434 - -
Tsu01g00262 631 SMART HOX_1 359 423 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00262 Tsu-Chr1 2176557 2180594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00262 178 631 Homeobox Transcription Factor Family AT2G16400 45.806 1.95e-111 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu01g00262 POX 4.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00262 - - gmx:100775682 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00262 01 2176557 2180594 Tsu01g00262 01 2176557 2180594 ECH
Tsu07g00308 07 2373161 2375875 Tsu01g00262 01 2176557 2180594 PCT