Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00236 ATGAAGGGATGGTTAGTgataaatcttaaaaaaaaaggcaaGGGGATAAGATCTACTGAAATGGTTGCTGTTGATTGTGAAATGGTTCGCTGTGAAGATGGGACTGAAGCTTTAGTCAAAGTCTGTGTTGTAGATCACAATCTAGAGGTCAAGTTACACAAACTTGTTAAACCGGAGAAAGCAATCGTAGACTATAAAACAGAGATTACTGGTGTCTCTCCTGAAGATCTAAAGACAGTGACTTGTTCCTTAGCTGATATACAGAAATCGATGAAGAAGTTGTTATCCAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGTGTGCTGAAGCTAGATTATGTTAGAGTGATCGACACTGCATACATCTTCCAACCCTTGGATGGATCAATTCACATGAGACCTTCTTTGAATAGTTTATGTCAGTCTGTGTTGGGCTATGAAGTTCGGAAAAAGGGTGCTGCACATGATTGTCTTGATGATGCATGTGCAACGATGAAACTTGTTCTTGCAAAGATAAAAAATGGTGTTGATAAGCCATTTCCATTGACATCGGTTGTTCAAGAGCCTGTTTCAGAAAGTGAGATGGCCAAACTGTTCATTCACAGAATTCCAACCACTATGAACATTGAAGCACTACATGAAATTGTTCCCGGAGACTTCACAATAGAGCGAAAGCCTTCTAGGAATGATCAAGGAGATAAGTATTCCGCCTTTGCGATCTTTAAGAACCAACGAGAGGCACACGATGCATATGAAAATCTCCAAGGCAGCCAATCAAAGGATTCAAATGGGCGTCTACAGAAAATTGTCACATGTCGGCTGAGTACGGGCATGAGTGTCAGTGTATGTGTTCGGGAAATGGGATTTGATGATCAACACAAAAAATTGCCACGTAAGAGAGATTTACCAGAGGATGAGACAGTTGATGTTCCCGAGAACAAGAAAGTAAAAATGGATCCTGAAGTTGAAAAGGGCTACTTGAAAGAGATAGAAGCACTGAATCAACAATTGAAAGAAAGTCTGGCGGAGATTGATTCATTGAGGGAACAGTTGAGAAAAGTAGATCCCGAAATTTTAAAGGATGCCCACTTGAAAGAGATTGAAGCATTGAATCAACGATTGAAAGAGAGTGAATTGGAGATTGAATCATTTAGGGAACAGACAAGAAAAAAGGACTTTGAACTGGGCAATCTGCATAAAATGATATCGAGCTTGCATCAACAGGTTGCAAGAAAGACAAGCAAGCCAAGAACTAAAAAATAG 1275 0.3922 MKGWLVINLKKKGKGIRSTEMVAVDCEMVRCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIVDYKTEITGVSPEDLKTVTCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKLDYVRVIDTAYIFQPLDGSIHMRPSLNSLCQSVLGYEVRKKGAAHDCLDDACATMKLVLAKIKNGVDKPFPLTSVVQEPVSESEMAKLFIHRIPTTMNIEALHEIVPGDFTIERKPSRNDQGDKYSAFAIFKNQREAHDAYENLQGSQSKDSNGRLQKIVTCRLSTGMSVSVCVREMGFDDQHKKLPRKRDLPEDETVDVPENKKVKMDPEVEKGYLKEIEALNQQLKESLAEIDSLREQLRKVDPEILKDAHLKEIEALNQRLKESELEIESFREQTRKKDFELGNLHKMISSLHQQVARKTSKPRTKK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00236 424 Coils Coil 364 391 - -
Tsu01g00236 424 Gene3D - 16 184 IPR036397 GO:0003676
Tsu01g00236 424 PANTHER SMALL RNA DEGRADING NUCLEASE 2 4 309 - -
Tsu01g00236 424 SUPERFAMILY RNA-binding domain, RBD 197 265 IPR035979 GO:0003676
Tsu01g00236 424 CDD REX1_like 22 173 IPR034922 -
Tsu01g00236 424 Coils Coil 327 358 - -
Tsu01g00236 424 Pfam Exonuclease 22 171 IPR013520 -
Tsu01g00236 424 Coils Coil 423 424 - -
Tsu01g00236 424 SUPERFAMILY Ribonuclease H-like 21 178 IPR012337 -
Tsu01g00236 424 SMART exoiiiendus 20 181 IPR013520 -
Tsu01g00236 424 CDD RRM_SF 202 260 - -
Tsu01g00236 424 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 4 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00236 Tsu-Chr1 1882318 1885164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00236 17 171 C2H2 Transcription Factor Family AT3G27970 34.884 4.23e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00236 K14570 - gmx:100785565 483.796