Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00234 ATGTCATTCAAGAGCATTATGAGAGAGCTCAAGGAAATGAAAGAGGGACTTAGCAACATGTATAGAAGAGGTGCTCCTCTATGTTCCTCACCAACAACAGAATCATCATCATATGGCCAGTGGGCTAACTTACCTTATGAGTTGCTATTACACATAATTCAAAGGGTCGAAGCTAGTGAAACCTCGTGGCCATCTCGTCGAGCACTTGTAGCTTCTTGTGCCTCAGTTTGTAGATCGTGGAGAGAGATAACAAAGGGTATTGTTAAGACACTTGAACAGTGTGGTATGTTCACTTTCCCTGTATCATTGAAACAGCCTCCTCCAAGGGACAATCCGATTGAGTGTTTCATTAAGAGAGACAGGGATAATTCCACTTATAGTTTATATCTTGGTTTGAGCCCTGCTCTTTCTAGAGAAAATAGCAAACTGCTCTTAGCAGCAAAGAAGATTACAAGAGCAACGTGTACAGAATTTTTAATATCATTGGCTGATGATGATTTCTCTAAAAATTACATTGGAAAGATAAGGACTAATTTTATCGGCACCAAGTTCATGATCTTCGGCGGTCATCCTCCACACGATTCTTCACTTCCATTGAGCTGTATGTATGTTGCAGCAAAGGATCCATCAGAAGCAGGTACTTCCAAAGGCTGCTCCTGCTACGACAACTGCAACGCTCAACTTGCACTGATTTTGGAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGGGTCACGGTGGCTTCGGTGAAGAATTTTCAGCTTATAATATCTGCAGAACCTTATCAACTTATACCGGATGCAGATGATGAGACCGTTATACTACAATTTGGAAAAATTGGGAAGGACTTATTCACTATGGATTATCGATATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGCTTGAGTGCCTTTGACACAAAACCAGTTTGTGAATGA 969 0.4138 MSFKSIMRELKEMKEGLSNMYRRGAPLCSSPTTESSSYGQWANLPYELLLHIIQRVEASETSWPSRRALVASCASVCRSWREITKGIVKTLEQCGMFTFPVSLKQPPPRDNPIECFIKRDRDNSTYSLYLGLSPALSRENSKLLLAAKKITRATCTEFLISLADDDFSKNYIGKIRTNFIGTKFMIFGGHPPHDSSLPLSCMYVAAKDPSEAGTSKGCSCYDNCNAQLALILENKAPRWHEQLQCWCLNFKGRVTVASVKNFQLIISAEPYQLIPDADDETVILQFGKIGKDLFTMDYRYPLSAFQAFAICLSAFDTKPVCE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00234 322 PANTHER TUBBY-RELATED 1 197 - -
Tsu01g00234 322 PANTHER TUBBY-LIKE F-BOX PROTEIN 224 322 - -
Tsu01g00234 322 PANTHER TUBBY-RELATED 224 322 - -
Tsu01g00234 322 SUPERFAMILY F-box domain 29 84 IPR036047 GO:0005515
Tsu01g00234 322 Pfam Tub family 103 198 IPR000007 -
Tsu01g00234 322 Pfam Tub family 222 317 IPR000007 -
Tsu01g00234 322 Gene3D Tubby Protein; Chain A 209 322 IPR025659 -
Tsu01g00234 322 Gene3D Tubby Protein; Chain A 100 208 IPR025659 -
Tsu01g00234 322 Gene3D - 40 86 - -
Tsu01g00234 322 Pfam F-box domain 41 89 IPR001810 GO:0005515
Tsu01g00234 322 SUPERFAMILY Tubby C-terminal domain-like 92 322 IPR025659 -
Tsu01g00234 322 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 197 - -
Tsu01g00234 322 ProSitePatterns Tub family signature 1. 250 263 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00234 Tsu-Chr1 1863695 1865319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00234 32 322 TUB Transcription Factor Family AT1G47270 50.704 6.96e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00234 Tub 5.9e-48 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00234 K19600 - gra:105771218 367.851