Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00223 ATGACAGCTTCTTCCTCTATGTCTGATTTCTCGATTCTAAAGGCGTTTAACATTAAAGTTCATCCTCCCAAAGCTCCTCTTGTCAAAGAATTTTTATGGCACCCTCCGGTCTTCAATTGGATCAAATGCAATACCGATGGGGCTTCAATTGGTGTTCCGGCTATGGCAGCTTGTGGTGGCATTTTCAGAAACTCCAGGTCTGATCACCTAGGGAGTTTTGCGTTTAATATTGGTGAGGGAAATGCTTTCCTTGCTGAGCTTACTGGTGCTATGTTGGCTATTGAGATTGCTGCTTCGAAAAGTTGGGTTCATTTATGGCTTGAGTCTGACTCAAGACTTGTTGTTTTGGCTTTTAGCAATCCTTCCATGGTTCCTTGGAGAATTAGAAACAGATGGATGAATGCTTTGCTCCTTACTAAATCCATGAGATTTATGGCTACTCACATTTATAGGGAAGGAAATCACTGTGCGGATAAGCTTGCTAACATTGGTTTAACCGTTCAAACTTTTACTTGGTGGGATGACGTGCATAGGGCCCTTTCGGTGGATTTTGCcaggaacaagatggTCGATCTTCATTCTCATTGGCAGATACCTATCTTCACCGCGCTTTTCGAGAGGTTGGCTCAGAATGGCTCAGAACAAGGTCTGTCACGGTTTCCAGAACAAAAGCGTAAAATCCATAGGTGGGAGCTCATGGCGACGGTTGTTGAGAAACGAATGGCGTACGACGAGCTAAGCAGTCAACAGGAATATTTTAAGCTGAAAGCACGTTATGAAGCATTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGACCTCTGAGCTGTAAAGTGTTAGAGACGCTTGAAAGCCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGTTGGTTGAATCTGATGAACAGGAGTTAAAGCATACAGTTCAAACCACCAAAGCTGGTATGCAGGTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATTTAGGCATGCACATTCACGATTTAGCTCATGCTGCATCTGGATATCATAGAGTTCTCGAAGAAAATCGCAAACTATACAATGAAGTTCTggatatgattttttattttttttag 1113 0.4151 MTASSSMSDFSILKAFNIKVHPPKAPLVKEFLWHPPVFNWIKCNTDGASIGVPAMAACGGIFRNSRSDHLGSFAFNIGEGNAFLAELTGAMLAIEIAASKSWVHLWLESDSRLVVLAFSNPSMVPWRIRNRWMNALLLTKSMRFMATHIYREGNHCADKLANIGLTVQTFTWWDDVHRALSVDFARNKMVDLHSHWQIPIFTALFERLAQNGSEQGLSRFPEQKRKIHRWELMATVVEKRMAYDELSSQQEYFKLKARYEALQRSQRNLMGEDLGPLSCKVLETLESQLDSSLKQIRSTRLVESDEQELKHTVQTTKAGMQVMQMKFHEEFSNLGMHIHDLAHAASGYHRVLEENRKLYNEVLDMIFYFF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00223 370 ProSiteProfiles K-box domain profile. 245 345 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu01g00223 370 Gene3D - 40 166 IPR036397 GO:0003676
Tsu01g00223 370 PANTHER OS05G0353850 PROTEIN 23 185 - -
Tsu01g00223 370 PANTHER OS06G0683500 PROTEIN 23 185 - -
Tsu01g00223 370 CDD RNase_H_like 43 162 IPR044730 -
Tsu01g00223 370 Pfam K-box region 247 310 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu01g00223 370 Pfam Reverse transcriptase-like 44 162 IPR002156 GO:0003676|GO:0004523
Tsu01g00223 370 SUPERFAMILY Ribonuclease H-like 39 173 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00223 Tsu-Chr1 1746022 1749885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00223 245 300 MADS-box Gene Family AT1G24260 80.357 4.87e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00223 K10406 - lang:109338411 192.586