Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00210 ATGGACATCATGGACCTCGACAACAAAGAACAAAAACCCATTTTGGTAATCTTAGTGGGTGCGCCTGGAAGCGGGAAATCAACCTTCTGTGAAGAGGTTATGCGTTCCACTTCTCGCCAGTGGGTTCGCGTTTGTCAGGACACTATTGGAAATGGTAAAGCAGGAACTAAAGCTCAATGCCTAAGTAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTCATTGACAGGTGCAATCTTAACATAGAACAGAGATCAGATTTTATAAAGCTTCGGGGTGAAACCGGGATAGATATGCATGCAGTTGTACTTGATCTTCCTGCTAAACTTTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAATAAAGAGCTGCCCAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGCCAGAGTGAGAGTAATGTCAAAGATGCTATTGATACATACCAAAAACTTGGGCCACTGGAGAACCTTTCACATGGTTGCTTTGGTCAGAAAAATCCAGATTCCAAAATCCAATCTAGTATAATGAAATTCCTGAAAAAGGCAGAGGTTCCAGTTGATACAGCATCTAAAGAAAATGTCATCGGAGACTCTACTTCCCAGATTCCTGGGAAAAATGATTCCCTCTTCAAAGATACGGAAAAAGTTCCATCACCGCATGATAATTCCAAGTTACGGTCAAAGGAAACAAAAGGCCAGGCTGATAAATCTGCTGGTTCCTGTCACAATCAAATTTCTTTGGATGATCCCCCAACTCTTGCATTTCCGTCTATTTCAACAGCTGATTTCCAATTCAGCAATGATAAGGCAGCTGATATTATTGTTGAGAAGGTCGCGGAGTACTCAAATAAGTTGGGGAATGCCAGGCTTGTTCTAGTTGACTTGACACACAAGTCAAAGATTTTGTCCTTAGTTAAATCCAAACTGGCAGAAAAGAACATTGATACCCAAAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTCATTCCACAGGAGGTTTGCGCTGTAATGTCATTGCTAATGCTGCCAATTGGCGGCTAAAACCTGGTGGCGGAGGTGTTAATGCATCAATTTTTGATGCCGCGGGTCCTGAACTGGAGTCTGCAACCAAAGAAAAAGCGAAGTCTCTTTCACCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCATTGTTCACAAGAGAAGGTGTGACCCATGTAATACATGTCCTTGGACCTAACATGAATCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAAAGGCTGCAAAGTTCTCCAAGATGCTTATGCATCACTATTTGAAGGTTTTGCATCAATCGTTAGGAACCAGGTACAGCATAATGAAAACCTTGGGAAAAAGGCTTTGGAGTTGCAGGATCATTCTGAAAAGTGTTCCATAAATTATTCCACTAATTCTGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCGGAAAAAAGCAAGAAATACAAGGGAACTCATTATCGTCTTGAATTGACCTTTACGGGTTCTAAGGAGGAAAAGGTAGATTCAGAGCATAGAAGAACCGATGGAAGCACGAGGAAGGCTTGGGGGTCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGATGACTTGCTTGAAATTTCAGAGGACGTTATTGTATTGAATGATATGTATCCTAAGGCACAGAAGCATGTTCTGGTGTTGTCACGTAGTAGAGGTCTTGATTCCCTATCAGATGTCCAAGAGGAGCACCTTTCGGTATTGAAAAGGATGCATGCAGTGGGTTTAAAATGGGCTGAGAAATTCTTGAGCGAGAATGCTTCATTAGTATTTCGCCTTGGATATCACTCGGCTCCGTCAATGCGGCAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAAAACATTTGAAGAATAAGAAGCATTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTAGATATAATTGATGAGGTATCTAATCATGGAAAAGCAACATTGAAAGATGATGACAAGCTGCTGTCTATGGAGTTGAGGTGCCATAGATGTAAAAGTGCACATCCAAACATACCCCGCCTAAAATCACATATTAGTAACTGCCAAGCACCCTTTCCTGCTTACCTACTCGAAAACGGGCGTTTAGTCGGTGCATGCACCAGATAA 2256 0.4167 MDIMDLDNKEQKPILVILVGAPGSGKSTFCEEVMRSTSRQWVRVCQDTIGNGKAGTKAQCLSSAARALKDGKSVFIDRCNLNIEQRSDFIKLRGETGIDMHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQNKELPKLSEGFNRITFCQSESNVKDAIDTYQKLGPLENLSHGCFGQKNPDSKIQSSIMKFLKKAEVPVDTASKENVIGDSTSQIPGKNDSLFKDTEKVPSPHDNSKLRSKETKGQADKSAGSCHNQISLDDPPTLAFPSISTADFQFSNDKAADIIVEKVAEYSNKLGNARLVLVDLTHKSKILSLVKSKLAEKNIDTQKFFTHVGDITRLHSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKSLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYEKGCKVLQDAYASLFEGFASIVRNQVQHNENLGKKALELQDHSEKCSINYSTNSDQKSKRDADHGSEKSKKYKGTHYRLELTFTGSKEEKVDSEHRRTDGSTRKAWGSWAQALHQIAMHPEKHKDDLLEISEDVIVLNDMYPKAQKHVLVLSRSRGLDSLSDVQEEHLSVLKRMHAVGLKWAEKFLSENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDIIDEVSNHGKATLKDDDKLLSMELRCHRCKSAHPNIPRLKSHISNCQAPFPAYLLENGRLVGACTR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00210 751 SMART YBR022w_8 340 480 IPR002589 -
Tsu01g00210 751 Gene3D - 553 734 IPR036265 -
Tsu01g00210 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 159 IPR027417 -
Tsu01g00210 751 MobiDBLite consensus disorder prediction 493 516 - -
Tsu01g00210 751 MobiDBLite consensus disorder prediction 214 265 - -
Tsu01g00210 751 Pfam C2HE / C2H2 / C2HC zinc-binding finger 676 729 IPR032566 -
Tsu01g00210 751 ProSitePatterns HIT domain signature. 640 658 IPR019808 -
Tsu01g00210 751 ProSiteProfiles Macro domain profile. 328 594 IPR002589 -
Tsu01g00210 751 Pfam Macro domain 363 442 IPR002589 -
Tsu01g00210 751 Pfam AAA domain 15 143 - -
Tsu01g00210 751 PANTHER APRATAXIN 12 748 IPR026963 GO:0003677|GO:0006281|GO:0033699
Tsu01g00210 751 SUPERFAMILY Macro domain-like 322 461 IPR043472 -
Tsu01g00210 751 PANTHER APRATAXIN-RELATED 12 748 - -
Tsu01g00210 751 MobiDBLite consensus disorder prediction 214 229 - -
Tsu01g00210 751 Gene3D - 4 172 IPR027417 -
Tsu01g00210 751 SUPERFAMILY HIT-like 548 715 IPR036265 -
Tsu01g00210 751 Pfam Scavenger mRNA decapping enzyme C-term binding 560 671 - -
Tsu01g00210 751 Gene3D Leucine Aminopeptidase, subunit E, domain 1 316 467 IPR043472 -
Tsu01g00210 751 MobiDBLite consensus disorder prediction 501 516 - -
Tsu01g00210 751 MobiDBLite consensus disorder prediction 230 257 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00210 12 747 C2H2 Transcription Factor Family AT5G01310 57.065 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00210 K10863 - gmx:100786762 1154.43