Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00204 ATGCTCACAAGAAGAAAAATCCTCTCACTATTTTCATCTTCAAAACTAGTTTCTCATAAATTGAATGCAAATGCACTTCCACATCCAATTCACAATCCTTTCCCtcaaatttcaaacaattttagggttttcttaTTCAATCTCTACGGAACTCAAGATTCCAAGTTTCCTGAATACCAGATGCCTACTGTTACATGGGGAGTGATTCAAGGTCGAAAAGAGAAACTTGTTTCGCGTGTCATTATCTTTGATTACCTCAAGGGTTTAGGAATTATTCCTGATGAATTACAGGATTTAGAGCTTCCTTCAACCGTTGATGTAATGAGGGAACGTGTTGAGTTTCTTCAGAAATTAGGTTTAACGATTGATGATATTAATCAGTATCCTTTGATGTTGggttgtagtgttagaaaaaaTATGATTCCTGTTTTAGgttatttagaaaaaattgGGATTTCAAGGTCTAAACTTGGTGAATTTGTTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTTTGTGTTGCAAAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTAGTCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGTATGAGGGTTGGTACGATGATAAAGCCGCTCGTTGATTACTTGGTTAATTTGGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATATACTTGGCTATGATCTTGAAGAGACTGTGAAACCAAATGTTGATTGTTTGGTTAGTTTTGGTTTGAGGAAGGAGTGTTTGCCGTCGGTTATAGCTCAGTATCCACAGATTATTGGGCTTCCACTTAAGGCTAAATTGTCTTCGCAACTTTATTTTTTCAGTTTGAAGCTTAAGATTGATCCAGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCACCAAAATGTGATTATGAAACCAGTTGAGTTTTTACTTGGTAGGACAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGCCCTCAGTTGGTTGCGCTGCGAGTTGAGCTCATGAAGAACAgttatttcttcttcaaaagtGAGATGGGGAGACCTATAAAAGAGCTTGTGGAGTTCCCTGAATACTTCACTTATAGTTTGGAATCAAGGATTAAACCTAGATACCAGAGGCTCAAGAGCAAGGGAATAAAATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCAATTACATTGAAACCGAAAGTATAGGTCCTTCATTCTGTATTGGTGGGAAATTAGAGTTACCTGGGAATGACATAGTATCAGATGAGGAAGAGGAGAACAGGGAGCCAGAGACCAACAACTTCAAGCTGTTGCTGAAAGTTCAGCCGCATCTGTTGCAAGGGTGTGGTTATGGTAATTTCAAATGGCCATTTTGGTGCATGAATTTCAGTTGCTTAACATATGGATTCATCATCCGGCTTGCAGTAGCAGTGATTTCCGAACAACTAAATTGCTTGACAATTGACACATTAACCGCAGTGGGGCTGACAGGATTGATTGAAAGGACTGCTGTGATGGCTTCTCTTTCAATTTGGACCAATGGTGGTGGAGCTGGAGTAGAGAAGCTCTTCAGCTTGTGCGTGGTATCAGCTCTTTCGCTTTATGCTCCTAAGTGGCTTGGGCAGAGATCCCTCACTGGTCGCCGGGAGACGCTTATCTCAGCCTGGAGTTTTAGGATGTATACTTATGTGTAG 1884 0.388 MLTRRKILSLFSSSKLVSHKLNANALPHPIHNPFPQISNNFRVFLFNLYGTQDSKFPEYQMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGLTIDDINQYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGEFVKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLVSFGLRKECLPSVIAQYPQIIGLPLKAKLSSQLYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRTIPSQDVASMVIKCPQLVALRVELMKNSYFFFKSEMGRPIKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFCIGGKLELPGNDIVSDEEEENREPETNNFKLLLKVQPHLLQGCGYGNFKWPFWCMNFSCLTYGFIIRLAVAVISEQLNCLTIDTLTAVGLTGLIERTAVMASLSIWTNGGGAGVEKLFSLCVVSALSLYAPKWLGQRSLTGRRETLISAWSFRMYTYV 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00204 627 PANTHER EXPRESSED PROTEIN 46 486 - -
Tsu01g00204 627 Gene3D Transcription termination factor 3, mitochondrial 105 246 IPR038538 -
Tsu01g00204 627 Gene3D Transcription termination factor 3, mitochondrial 247 462 IPR038538 -
Tsu01g00204 627 PANTHER CGI-12 PROTEIN-RELATED 46 486 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 339 369 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 374 405 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 302 334 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 406 437 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Tsu01g00204 627 Pfam mTERF 144 452 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00204 Tsu-Chr1 1584129 1588024 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu01g00204 mTERF 2.1e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00204 K15032 - gmx:100809590 825.469