Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00186 ATGGAAGAAGTGGTGCTAGCTTCTGATAGAACTGATTGTGTGTTAATGTTCCTTGGAAGTGTTGGTTCTTTTGTTCATGGTGTTGCTCTTCCTGTTTTGTTTGGACGTATGATTGATTCTTTGGGGCACCTTTCTAATAATCCTCACAAGTTGTCCTCACAAATTTCTCAGCATGCTTTGTACTTGGTCTATCTTGGAGTAGTTGTTTTAGTTTCTGCTTGGATGGTGAGTGCTGGGAAGACTGTAGCAGTTGTTGGTCCAAGTGGTTCTGGAAAGAGCACAATTATTTCCCTTATTCAAAGGTTCTATGATCCCACTGCAGGTACTGTTGGATGGGCATGA 342 0.4181 MEEVVLASDRTDCVLMFLGSVGSFVHGVALPVLFGRMIDSLGHLSNNPHKLSSQISQHALYLVYLGVVVLVSAWMVSAGKTVAVVGPSGSGKSTIISLIQRFYDPTAGTVGWA 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00186 113 Pfam ABC transporter 75 110 IPR003439 GO:0005524
Tsu01g00186 113 PANTHER ABC TRANSPORTER B FAMILY 76 110 - -
Tsu01g00186 113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 110 IPR027417 -
Tsu01g00186 113 PANTHER BRACHYTIC2 6 77 - -
Tsu01g00186 113 PANTHER ABC TRANSPORTER B FAMILY 6 77 - -
Tsu01g00186 113 Gene3D - 74 110 IPR027417 -
Tsu01g00186 113 PANTHER BRACHYTIC2 76 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00186 Tsu-Chr1 1440334 1441337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00186 1 74 Calmodulin-binding Proteins AT2G36910 37.662 1.86e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00186 K05658 - gmx:100787093 114.775