LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00185	ATGGTTGAGAGAGCAAATGGGTTTGGTGAGTCAGGAACCAGCACTATTTGCCACTACAATAGCTGGattttatttggaaaagaaGATTCCGACATGAATCAAATCATACTAGCTGCCAAGGCTGCAAGTGCTCATTCTTTCATTACAGGGTTACCTGAAGGCTGTAATACTCAGGTTGGAGAAGGTGGCAGGCACACAACTTTCAGGGATCAAAAGCAAAGAATTGCTATAGCAAGAGCAGTGCTCAGAAACCCAAAAATATTGCTTTTAGATGAGGCGACCAGCGCATTGGATGCTGAATCTGAACTCATTGTCCAGCAGGCACTGGAAAAGATAATGTTAAACTGGACAACAATAGTTGTTGCTCACCGGTTATCCACCATATGCAATGTAGATACAGTTATTGTGCTGAAGAACGGTCAGGTTTCTGAAAGCAGGACTCATTCGGAGTTGATGTCCAAATATGGCGAGTATGTGAGTCTAAACGTAGCTCTCACTCTAACAGCATTTGTTATTGCCTTCACATTGAGTTGGAAACTAACATTAGTGGTTGCAGCTTGCTTTCCCCTTCTTATAGGAACTTCCATCACAGAGCAATTATTTCTCAAGGGATTTGGTGGAGATTACAGCAATGCATATTCTAAAGCAACTTCTTTGGCTCGGGAAGCTATTTCCAACATACGTTCTGTTGCTGCTTTTGGTGCAGAGGATCGAATATCAATCCAATTCGCGTCTGAACTGAACAAACATAACAAGCAGGCACTTCTAAGAGGCCACATATCAGGTTTTGGTTATGGTGTGACGCAGCTGTTGGCTTTCTGCTCCTATGCACTTGGGCTTTGTTATGCATCCGTCTTAATCAAGAAGAAAGAGTCAAATTTTAGAGATGTCATGAAGGCCTTAATCATCACTGCTCTTGCAATAGCAGAAACGCTAGCTCTTACACCGGATATTGTGAAAGGGTCACAGGCACTAGGATCAGTTTTCAGAATCCTCCATATTAGAACAGCCATCAACCCAAACAACTAG	1029	0.4218	MVERANGFGESGTSTICHYNSWILFGKEDSDMNQIILAAKAASAHSFITGLPEGCNTQVGEGGRHTTFRDQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMLNWTTIVVAHRLSTICNVDTVIVLKNGQVSESRTHSELMSKYGEYVSLNVALTLTAFVIAFTLSWKLTLVVAACFPLLIGTSITEQLFLKGFGGDYSNAYSKATSLAREAISNIRSVAAFGAEDRISIQFASELNKHNKQALLRGHISGFGYGVTQLLAFCSYALGLCYASVLIKKKESNFRDVMKALIITALAIAETLALTPDIVKGSQALGSVFRILHIRTAINPNN	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00185	342	PANTHER	BNAA09G27580D PROTEIN	162	341	-	-
	Tsu01g00185	342	PANTHER	BNAA09G27580D PROTEIN	20	161	-	-
	Tsu01g00185	342	SUPERFAMILY	ABC transporter transmembrane region	151	334	IPR036640	GO:0005524\|GO:0016021
	Tsu01g00185	342	Gene3D	ABC transporter type 1, transmembrane domain	163	329	IPR036640	GO:0005524\|GO:0016021
	Tsu01g00185	342	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	20	161	IPR039421	-
	Tsu01g00185	342	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	23	161	IPR027417	-
	Tsu01g00185	342	Pfam	ABC transporter transmembrane region	158	303	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Tsu01g00185	342	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	162	323	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Tsu01g00185	342	Pfam	ABC transporter	71	95	IPR003439	GO:0005524
	Tsu01g00185	342	Gene3D	-	23	161	IPR027417	-
	Tsu01g00185	342	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	162	341	IPR039421	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00185	Tsu-Chr1	1438815	1440311	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00185	153	342	Calmodulin-binding Proteins	AT2G36910	41.327	7.27e-37	139

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00185	K05658		-	gmx:100787093	291.197