Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00180 ATgaattctctttcttcttctactCCTCTTCATAATAGCACTTGTTTCataataatactaattattGTGGTTTCATGCAAATTAACAAATGCTATTGTGAAATTGCCACCAAATGTTACAGTTCCAGCAGTGTTGGTCTTTGGAGATTCAATTGTGGATACAggtaacaataacaataatttgAGAACAACAGCTCGTTGCAATTTCCCACCTTATGGGAAAGATTTTAAAGGAGGGATTCCAACCGGAAGATTCAGCAATGGAAAAGTTCCCTCAGACCTCCTAGTTGAAGAATTAGGCATTAAAGAGCTTCTTCCCGCATACTTAGATCCAAATCTTCAACCTAGTGATTTGCTTACTGGTGTATGCTTTGCATCCGGTGGTGCTGGATATGATCCTTTGACATCTCAAACATCGTCAACAATATCTTTATCCGGTCAACTAGACTTGTTCAAAGAATACATAGAAAAATTAAGAGTACTTGTTGGAGAGGAGAAAACAAACTTTATCTTGACAAATAGTCTTGTCCTTGTGGTATTCGGCAGCAATGACATATCCAACACATACTTCTTATCTCGTATTAGACAAGTTCAGTATGATTTTCCTTCTTATGCTGATTTTATGGTCAACTCAGCATCTAATTTCTTAGAGGAAATATATGAACTAGGTGCAAGAAGGATTGGAGTATTCAATACACCACCAATTGGGTGTTTGCCATTTCAGAGAACAGCAGCTGGaggaatagaaagaaaaattgtAGTGGAATACAATGAAGCAGTTGAATTATACAACAACAAATTGTCAAAGGGGTTAGCTTCTTTCAATCAGTACTACCCAAATAGCAGGATTGTTTACATTGATGTCTACAACCCTCTACTTGACATCATTGTCAACTCCGATAAATACGGATATAAAGTGGAAGATAGAGGGTGCTGTGGTACAGGCATAATAGAGGTTATGTTGTTATGCAACCATTTGGTTTCTACTTGTCCCAATGATATGGAGTTTGTCTTTTGGGATAGTTTTCATCCAACTGAAAGTGTTTACAAACGTCTCATACCTCCTATTGTCCAAAAATACCTCAAAGATTTTATATAG 1098 0.3488 MNSLSSSTPLHNSTCFIIILIIVVSCKLTNAIVKLPPNVTVPAVLVFGDSIVDTGNNNNNLRTTARCNFPPYGKDFKGGIPTGRFSNGKVPSDLLVEELGIKELLPAYLDPNLQPSDLLTGVCFASGGAGYDPLTSQTSSTISLSGQLDLFKEYIEKLRVLVGEEKTNFILTNSLVLVVFGSNDISNTYFLSRIRQVQYDFPSYADFMVNSASNFLEEIYELGARRIGVFNTPPIGCLPFQRTAAGGIERKIVVEYNEAVELYNNKLSKGLASFNQYYPNSRIVYIDVYNPLLDIIVNSDKYGYKVEDRGCCGTGIIEVMLLCNHLVSTCPNDMEFVFWDSFHPTESVYKRLIPPIVQKYLKDFI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00180 365 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 44 55 IPR008265 GO:0006629|GO:0016298
Tsu01g00180 365 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 18 360 - -
Tsu01g00180 365 Pfam GDSL-like Lipase/Acylhydrolase 44 352 IPR001087 GO:0016788
Tsu01g00180 365 PANTHER GDSL ESTERASE/LIPASE EXL3 18 360 - -
Tsu01g00180 365 CDD SGNH_plant_lipase_like 42 352 IPR035669 -
Tsu01g00180 365 SUPERFAMILY SGNH hydrolase 43 360 - -
Tsu01g00180 365 Gene3D SGNH hydrolase 35 359 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00180 Tsu-Chr1 1409216 1415000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00180 38 358 Pollen Coat Proteome AT1G75910 40.491 1.88e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00180 - - mtr:MTR_1g025680 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00180 01 1409216 1415000 Tsu01g00180 01 1409216 1415000 ECH
Tsu07g00245 07 1890826 1894517 Tsu01g00180 01 1409216 1415000 PCT