Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00178 ATGAATTTCAACTACTCCGATGGTTATGATCGTTCTCCTTTCGATGAAATTGATAATTCTATTGTCGCATATAATTTGTATAATGTTATGAAAGCCCACGAAAAGAAACGCACCCTGCGGCGTCGCAGCTCTGAAGTCCGGCAACGCAACTCCATTCTGAACGGCAACGACCAGACCAGGAATATGGAAGGTGGTTCAAGTAAGATTCACAAGACTAGCCAAATAGCAAGTGTAAGTCAAGAACAAGACATGATCAACAACAAGCTACCTGAATCGCTTATAAATCGCATTTTGTCTTTCCTCCCAACAAAAGATGCAGTTCGAACTTGTGTGCTGTCCAAGAGATGGATGAATCGGTGGACATACATCACCCAGTTAGACATCAATGATAGTGATTTATCGTATGATTACAATCCAATCTGCTCTTATTGCCAAAACATTTGCATCGATTATTGCTATGAGTATGATAAGTATACTACGACTATTTGTACTCAGTGTCGTTTTCTCTGCAACCATCAACTCATAATGCAAGATGCACATATATATGAAAGGCTTGTGAATATAGATCATGAGAGCGGCATGAAAATAGAATCAGGTAAAAAAGAGCAGCGATTTGTACATTTTGTGGGGAGAGTACTTCTTCTTACTTATAAATCAAGCATAGAAAGGTTTTCTTTAGTGATCAATAACAAGCGTGATGTATCCCTACAAAATACTTGGATCTCTAGCATCTTGAATCAGAGAGTGAAAAATCTTCGGattcattcatatttttataaactcCCCTTCTCTCGTCTTACATCTAATTATCTTTTCAACTGCACCTCATTAGAAGAATTGGAATTGGTACTCCATGTGTTCTCCACCATAATAGTTCCCACCATCTCCATTCATTTTGGACACCTAAAAATCCTCAAGTTGTCAGGGATCTTTTTTAACATCCATTCCTCCAGTGACTGTATGACCCTTTGTTTACCACTTcttaaaaagtttgattttaaaaactGCAATTGGTCTAGTGGAAAGGGTCTTATTGTACAAGCTCCTCTGCTGGAAAATGTTTCCATAGAACAAGACATTGAATTTTATAATGTGATATCTCATGACCCGCCTATCCTATCAATGAAATTCAATACTTTAAATCTCAAAGAATTCACCTACTCAGGCTGTGGTATTGCTCAACGAATTCATTTGTTCAATCACAATGTTGTGTCTTTTGATTCTGCTGAAATCATTTTGATAAAGTGTAGGCAGACAATTCTTGCAACAAAATGCCTTccttttctacttctcctttTCCAACAATTCCATCAAGTGAAATCTATCAAATTTGAGCGGTTTGATTTGTATTTGGAGGTGCTACTGACAAAAGCTAATATACCAGTATTTTCATTGTTGAGCAAATTGGAGCTTGGCTTAGTAACTATTGAACTTCTTATGGTCTTGCTTCAAAAGTCGCCGGTGCTCAAGACATTAGTTCTCAAGGGATTacataattttgacaaagaGTTTCTCAGTTCTGCTGGTGTGCCACATTGTTTGATCTCTTCTCTCCAAATTGTGAAATTTGAGAAAGTTAACGGTGACAAGCATGAGATGTTTTTAgccaaatattttattgaaaatggtATGATGCTGGAAGAGTTGGGTTTCTCCATTGCTAGTCAAAGGCCAGACAAATCTAAGGTTGTAGATGAATTTAAAGAGATGGTGTATCCATTTAAGAAAAGAGTATCCAACATTGCAATTGCACAAACTACCACTGCAGCATTTCCTGCAGTGTTTGCATTTGGTGACTCAATCTTTGACACTGGAAATAATAACAACCTTTTTACTGCATCTAAGTGTAATTTTCCTCCATATGGAAAGGATTTCTACGGAGGACAGGCTACCGGAAGATTCGGTAACGGCAGAGTTCTATCAGATTTGATAACGGCGGCGTTGGGAGTGAAAGACACATTGCCAGCGTTCTTGAATCCAGCTTTAACCGCGCAAGACCTTCCTACTGGGGTATGCTTTGCATCAGGTGGTTCAGGTTTTGACGATTTGACAGCAAACATGCAGGGAGGAGTATTGACAATGAGCGCTCAATTGAGATTGTTCGAACAATACATAACAAAGCTGAGAGCAGTTGTTGGAACAGAAAAGGCAGCCGATATCATATCCAAAGCTTTGTTTATAATATCAGCAGGAAACAATGATGTCGGATTTGCTTATTCTTTTACAATAAGGAGAGTTTTGCCTTTCAATATATATGGCGGTCAATTAGTTAGCGCAAGTCAAAATTTCCTCAAGAGTCTATATCAATTGGGCGCACGACATGTGTGGGTTCAAAGTACAGTGACATTGGGATGCTTACCAGCTGCTAGATCAACAATGGGAGGACCATTAAGGGTCTGTGTAGATTATGAGAATATGTACGCACAACAATATAATGGCATGTTAGCAGCTGGGGTTGCAAATCTTAAAAGCTCCCTTCCTGATTATGATCTTAGATTCGTCGATGTTTATACTCCCATGCTTCGTATCATACAGAATCCTTCGGCAGCAGGGTTCGTAAATGCTTGGAACGGTTGTTGTGGAACTGGAACATTTGAAGTGGGAACATCATGCAATACATTTACATTCCAATGTCCAAGTACTGCACAATACTTTTTCTGGGATGTTGCTCATCCTACAGAGAGAGCTTATCAAGCCACTCTTGCTCAATTGTTACATGCTCTGAACTATGACCTTAATAGTTACAATATTTCCAAAACACTTCATCCTTTGAATGTATCAAATCTTATCTTTTAA 2796 0.3752 MNFNYSDGYDRSPFDEIDNSIVAYNLYNVMKAHEKKRTLRRRSSEVRQRNSILNGNDQTRNMEGGSSKIHKTSQIASVSQEQDMINNKLPESLINRILSFLPTKDAVRTCVLSKRWMNRWTYITQLDINDSDLSYDYNPICSYCQNICIDYCYEYDKYTTTICTQCRFLCNHQLIMQDAHIYERLVNIDHESGMKIESGKKEQRFVHFVGRVLLLTYKSSIERFSLVINNKRDVSLQNTWISSILNQRVKNLRIHSYFYKLPFSRLTSNYLFNCTSLEELELVLHVFSTIIVPTISIHFGHLKILKLSGIFFNIHSSSDCMTLCLPLLKKFDFKNCNWSSGKGLIVQAPLLENVSIEQDIEFYNVISHDPPILSMKFNTLNLKEFTYSGCGIAQRIHLFNHNVVSFDSAEIILIKCRQTILATKCLPFLLLLFQQFHQVKSIKFERFDLYLEVLLTKANIPVFSLLSKLELGLVTIELLMVLLQKSPVLKTLVLKGLHNFDKEFLSSAGVPHCLISSLQIVKFEKVNGDKHEMFLAKYFIENGMMLEELGFSIASQRPDKSKVVDEFKEMVYPFKKRVSNIAIAQTTTAAFPAVFAFGDSIFDTGNNNNLFTASKCNFPPYGKDFYGGQATGRFGNGRVLSDLITAALGVKDTLPAFLNPALTAQDLPTGVCFASGGSGFDDLTANMQGGVLTMSAQLRLFEQYITKLRAVVGTEKAADIISKALFIISAGNNDVGFAYSFTIRRVLPFNIYGGQLVSASQNFLKSLYQLGARHVWVQSTVTLGCLPAARSTMGGPLRVCVDYENMYAQQYNGMLAAGVANLKSSLPDYDLRFVDVYTPMLRIIQNPSAAGFVNAWNGCCGTGTFEVGTSCNTFTFQCPSTAQYFFWDVAHPTERAYQATLAQLLHALNYDLNSYNISKTLHPLNVSNLIF 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00178 931 SMART 9598neu4hmm 512 586 IPR006566 -
Tsu01g00178 931 CDD SGNH_plant_lipase_like 592 907 IPR035669 -
Tsu01g00178 931 MobiDBLite consensus disorder prediction 38 73 - -
Tsu01g00178 931 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 594 605 IPR008265 GO:0006629|GO:0016298
Tsu01g00178 931 Pfam GDSL-like Lipase/Acylhydrolase 594 899 IPR001087 GO:0016788
Tsu01g00178 931 SUPERFAMILY SGNH hydrolase 672 908 - -
Tsu01g00178 931 PANTHER GDSL ESTERASE/LIPASE EXL3 575 911 - -
Tsu01g00178 931 SUPERFAMILY F-box domain 87 159 IPR036047 GO:0005515
Tsu01g00178 931 Gene3D - 65 122 - -
Tsu01g00178 931 Pfam F-box domain 88 118 IPR001810 GO:0005515
Tsu01g00178 931 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 575 911 - -
Tsu01g00178 931 MobiDBLite consensus disorder prediction 48 73 - -
Tsu01g00178 931 Gene3D SGNH hydrolase 581 911 IPR036514 -
Tsu01g00178 931 Pfam FBD 509 549 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00178 Tsu-Chr1 1362825 1375918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00178 589 912 Pollen Coat Proteome AT1G75910 40.606 1.20e-70 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00178 - - mtr:MTR_1g025870 734.176