LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00176	ATGGTTAGCACTCCTAAATCTTCTTCTAATCATCACTCTCCGACGAGTGCTCCGTCATCGGCGCCGTCAGGTGACAGTAATAACCCTAATTTTACGCGAAAAACCCTTCCTTCACCCTGGGCTCAGGTCGTCCGTGGCGGCGAGACAGAATCACCTACCGGTGTTCATCAATCACTGCCGTCATCATCTTCGTCATCTTCCTCCTCTCTGACTACAGGCACAGCTGACCAAGCGCCGTCGTGTGATGATTCTCCAAAGGCGGTATCTATTCCGCCGCCGGTGGATGACTCAAATACGGTAGCCACCGTTGTAGATAACTCCGATGGTAGTGATGGCAATGCAGGTCTTTCTAAGAAGCCTGCATGGAACAAACCCTCAAACGGTGTCGTTGAGACTTCTCCTGTAATGGGTGCTGAATCCTGGCCTGCTTTGTCTGAATCCACCAAGTTTTCTGCTAAATTTCCAGCTGAATCCTCCTCGATGGTTCCCACCGATGGATCACCTTCCACTTCTCAGGGGCCTATAATTTCACATCCCCCTCAGAGACAAGGTACTACTAATGCAAGATCTAGTTCTGCCTCAGCAACAAACAATAATATGCCCAACAGACCAAGACCCGCGAGGCGGGTAGGTGGCAGCAATGTTGGGCCTGGTCCTGCTCAAAGCAGCTCGTCCAACCCTCCTACTCCTCCACCAGCTCCTCCTTTTCCTGTATATCAGCTCCCTCCAGTCAGCTATCGGAATATGGGGCCAATTATCCCCGACTCTTCTCCAAGAGATCATCACCGGAACAATAACTGGGATGCCAGACCATTAGTAGGGGGTTCCTCTCGCAGGGGCAATTTTGGGTCCCATCCACGAGGAGATGGTTCCtatcatcataataattatagtaGCAGGCGTGATCACGACCGTGGAAATTTTGTGAATACTAGAGATGCTCACGCACCCCAACCAAGGATGCCTCCTAGAGGAATAATGAGGCACCCACCACCACAACCTAGTACTGCTGCATTTTTGGGTCCTCAGCCGATTGGACCCTTTCCAAACCCTGTTCCTTATCCTGagtTGTATTACTTTCCAGCAGTAACGTTGGATGCCTTTAGGGGTATGCCAGTTTTCCCCCACAACCCTTCTCCTGTACCATTCTTCCCTGCTGCTGCTGCCGCAGAATCTCCTTTACCCATTTTGATAGTCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGCGACAGATGACTTTTTAAAGTCCAATATGGATGAAGAGGGTTGGGTTCCAATTACCTTAATAGCAAATTTCCCTCGAGTCAGAAACTTGACGAGTAACATTCAGATGATATTGGAGTCTATGAGAAATTCAAAAGTTGTGGATGTTCAGGGTGACAAGTTGAGGAGGCGCGATGAGTGGATGAAATATTTGCCCTCTGCTCAGGTTCAAGCTAATTCTAATTCACTTTCACCCGGTGAATCAAGCTACAATAACCTCACCGTTAATTTTCAAACAACTATCACTTTGGAAAAAACAACTAAAGATGAAGGCGGCGAGTCTTCTCATCAGTCTCAACTCTTAAGTGGAAGTGATGTTGCGGGGAACCCTAAATAA	1608	0.4733	MVSTPKSSSNHHSPTSAPSSAPSGDSNNPNFTRKTLPSPWAQVVRGGETESPTGVHQSLPSSSSSSSSSLTTGTADQAPSCDDSPKAVSIPPPVDDSNTVATVVDNSDGSDGNAGLSKKPAWNKPSNGVVETSPVMGAESWPALSESTKFSAKFPAESSSMVPTDGSPSTSQGPIISHPPQRQGTTNARSSSASATNNNMPNRPRPARRVGGSNVGPGPAQSSSSNPPTPPPAPPFPVYQLPPVSYRNMGPIIPDSSPRDHHRNNNWDARPLVGGSSRRGNFGSHPRGDGSYHHNNYSSRRDHDRGNFVNTRDAHAPQPRMPPRGIMRHPPPQPSTAAFLGPQPIGPFPNPVPYPELYYFPAVTLDAFRGMPVFPHNPSPVPFFPAAAAAESPLPILIVNQIDYYFSDANLATDDFLKSNMDEEGWVPITLIANFPRVRNLTSNIQMILESMRNSKVVDVQGDKLRRRDEWMKYLPSAQVQANSNSLSPGESSYNNLTVNFQTTITLEKTTKDEGGESSHQSQLLSGSDVAGNPK	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	154	203	-	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	154	326	-	-
	Tsu01g00176	535	Pfam	La domain	398	454	IPR006630	-
	Tsu01g00176	535	SUPERFAMILY	"Winged helix" DNA-binding domain	391	475	IPR036390	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	508	535	-	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	95	113	-	-
	Tsu01g00176	535	PANTHER	LUPUS LA PROTEIN-RELATED	8	523	IPR045180	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	1	37	-	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	517	535	-	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	1	134	-	-
	Tsu01g00176	535	PANTHER	LA-RELATED PROTEIN 1B	8	523	-	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	51	79	-	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	294	310	-	-
	Tsu01g00176	535	CDD	LAM	398	468	-	-
	Tsu01g00176	535	ProSiteProfiles	La-type HTH domain profile.	388	477	IPR006630	-
	Tsu01g00176	535	SMART	la	392	470	IPR006630	-
	Tsu01g00176	535	MobiDBLite	consensus disorder prediction	223	241	-	-
	Tsu01g00176	535	Gene3D	-	387	478	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00176	Tsu-Chr1	1352624	1357012	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00176	K18757		-	gmx:100785504	579.711

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g00176	01	1352624	1357012	Tsu01g00176	01	1352624	1357012	ECH
	Tsu01g00176	01	1352624	1357012	Tsu07g00241	07	1802335	1806641	PCT